You are querying gene by "AT4G02570".

Locus: AT4G02570 Alias: ATCUL1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction 17158585 12839993
GeneOntology - response to auxin stimulus 10654597
jasmonic acidMutant Hormone signal transduction Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. 10654597 15860010
GeneOntology - response to jasmonic acid stimulus 15860010

Basic gene information ( show / hide contents )

Locus AT4G02570 | Chromosome: 4 | Strand: +
Description
Alias
ATCUL1( alias )
AXR6( alias )
CUL1( alias )
Gene model
AT4G02570.1 | From: 1128622 | To: 1133696
AT4G02570.2 | From: 1128618 | To: 1133696
AT4G02570.3 | From: 1128619 | To: 1133696
Sequence
AT4G02570.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G02570.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT4G02570.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 15659098
cellular_component
phragmoplast PMID: 11387208
nucleus PMID: 11387208
ubiquitin ligase complex PMID: 10398681
condensed nuclear chromosome PMID: 0012058059
spindle PMID: 11387208
cytoplasm PMID: 0012058059
biological_process
response to auxin stimulus PMID: 10654597
jasmonic acid mediated signaling pathway PMID: 15860010
SCF complex assembly PMID: 15860010
response to jasmonic acid stimulus PMID: 15860010
cell cycle PMID:
embryonic development ending in seed dormancy PMID: 10654597
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  auxin     jasmonic acid  

[   auxin   ]

Genotype PMID Type
axr6 10654597 12839993 mutant
cul1-6 17158585 mutant
ebf1 cul1 17158585 mutant
ebf2 cul1 17158585 mutant

[   jasmonic acid   ]

Genotype PMID Type
axr6 10654597 12839993 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR158b
length: 20 
 
mfe: -24.1 kcal/mol 
p-value: 0.003058 
 
position  500 
target 5' A      C         A   A 
           GUUUUG CUGCG UUG GGG  
           CGAAAC GAUGU AAC CCC  
miRNA  3' A      A     A         
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR172a
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.059505 
 
position  2289 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR172b
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.062800 
 
position  2289 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR830*
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.002883 
 
position  2425 
target 5' U    A  G               A 
           AACC GA AUUAUUUGGAGAGGG  
           UUGG UU UGAUAAACCUCUUCU  
miRNA  3'      A                    
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR831
length: 22 
 
mfe: -26.0 kcal/mol 
p-value: 0.023970 
 
position  2401 
target 5' U       C             U 
           CAAGAAG GUAUGGAG GAUU  
           GUUCUUC CAUGCUUC CUAG  
miRNA  3'         U        U    U 
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR835-5p
length: 21 
 
mfe: -21.0 kcal/mol 
p-value: 0.049555 
 
position  2398 
target 5' C   C    A       G    U 
           GAU AAGA GCGUAUG AGGA  
           CUA UUCU UGUAUAC UUCU  
miRNA  3'     U            G    U 
 
 
target: AT4G02570.1 
length: 2747 
miRNA : ath-miR842
length: 21 
 
mfe: -30.1 kcal/mol 
p-value: 0.008503 
 
position  1690 
target 5' U               A     C 
           GGUGACGGAUUUGAC C UGG  
           CUACUGCCUAGACUG G ACU  
miRNA  3' C                 U     
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR158b
length: 20 
 
mfe: -24.1 kcal/mol 
p-value: 0.003011 
 
position  410 
target 5' A      C         A   A 
           GUUUUG CUGCG UUG GGG  
           CGAAAC GAUGU AAC CCC  
miRNA  3' A      A     A         
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR172a
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.057609 
 
position  2199 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR172b
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.060684 
 
position  2199 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR830*
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.002787 
 
position  2335 
target 5' U    A  G               A 
           AACC GA AUUAUUUGGAGAGGG  
           UUGG UU UGAUAAACCUCUUCU  
miRNA  3'      A                    
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR831
length: 22 
 
mfe: -26.0 kcal/mol 
p-value: 0.023138 
 
position  2311 
target 5' U       C             U 
           CAAGAAG GUAUGGAG GAUU  
           GUUCUUC CAUGCUUC CUAG  
miRNA  3'         U        U    U 
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR835-5p
length: 21 
 
mfe: -21.0 kcal/mol 
p-value: 0.048243 
 
position  2308 
target 5' C   C    A       G    U 
           GAU AAGA GCGUAUG AGGA  
           CUA UUCU UGUAUAC UUCU  
miRNA  3'     U            G    U 
 
 
target: AT4G02570.2 
length: 2657 
miRNA : ath-miR842
length: 21 
 
mfe: -30.1 kcal/mol 
p-value: 0.008213 
 
position  1600 
target 5' U               A     C 
           GGUGACGGAUUUGAC C UGG  
           CUACUGCCUAGACUG G ACU  
miRNA  3' C                 U     
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR158b
length: 20 
 
mfe: -24.1 kcal/mol 
p-value: 0.003009 
 
position  406 
target 5' A      C         A   A 
           GUUUUG CUGCG UUG GGG  
           CGAAAC GAUGU AAC CCC  
miRNA  3' A      A     A         
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR172a
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.057524 
 
position  2195 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR172b
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.060590 
 
position  2195 
target 5' G    U C              A 
           AUGC G CAUUGUCAGGA UC  
           UACG C GUAGUAGUUCU AG  
miRNA  3'      U             A  A 
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR830*
length: 22 
 
mfe: -27.4 kcal/mol 
p-value: 0.002782 
 
position  2331 
target 5' U    A  G               A 
           AACC GA AUUAUUUGGAGAGGG  
           UUGG UU UGAUAAACCUCUUCU  
miRNA  3'      A                    
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR831
length: 22 
 
mfe: -26.0 kcal/mol 
p-value: 0.023101 
 
position  2307 
target 5' U       C             U 
           CAAGAAG GUAUGGAG GAUU  
           GUUCUUC CAUGCUUC CUAG  
miRNA  3'         U        U    U 
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR835-5p
length: 21 
 
mfe: -21.0 kcal/mol 
p-value: 0.048184 
 
position  2304 
target 5' C   C    A       G    U 
           GAU AAGA GCGUAUG AGGA  
           CUA UUCU UGUAUAC UUCU  
miRNA  3'     U            G    U 
 
 
target: AT4G02570.3 
length: 2653 
miRNA : ath-miR842
length: 21 
 
mfe: -30.1 kcal/mol 
p-value: 0.008200 
 
position  1596 
target 5' U               A     C 
           GGUGACGGAUUUGAC C UGG  
           CUACUGCCUAGACUG G ACU  
miRNA  3' C                 U     
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT4G02570AT1G64520PositiveotherN/AGO/others11826296
AT4G02570AT2G39940PositiveotherN/Amutance15860010
AT4G02570AT3G62980nondirectionotherN/Amutance17410169
AT4G02570AT4G38630PositiveotherN/AGO/others12671091
AT4G02570AT5G49980nondirectionotherN/Amutance16920877

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10963
AccessionTaxon
116937Chlamydomonas reinhardtii
e_gw1.07.00.50.1Ostreococcus tauri
NP_001031575Arabidopsis thaliana
NP_001031576 ( AT4G02570 )Arabidopsis thaliana
NP_171797Arabidopsis thaliana
NP_175007Arabidopsis thaliana
NP_567243Arabidopsis thaliana
NP_001043048Oryza sativa Japonica Group
NP_001043049Oryza sativa Japonica Group
NP_001054659Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_1440083Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_1690020Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1770049Physcomitrella patens subsp. patens
29726.m004021Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF747882.1e-1078382IPR016159Cullin repeat-like-containing domain
PfamPF008887.5e-18721642IPR001373Cullin, N-terminal
SuperFamilySSF756322.4e-82382652IPR016158Cullin homology
PROSITEPS5006950.891383613IPR016158Cullin homology
SMARTSM001826.1e-84414563IPR016158Cullin homology
Gene3DG3DSA:1.10.10.107.2e-32638738IPR011991Winged helix-turn-helix transcription repressor DNA-binding
PfamPF105573.2e-28665732IPR019559Cullin protein, neddylation domain
SMARTSM008842.1e-34665732IPR019559Cullin protein, neddylation domain
PROSITEPS01256NA711738IPR016157Cullin, conserved site