You are querying gene by "AT3G62980".

Locus: AT3G62980 Alias: TIR1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone receptor LRRs containing F-box protein, auxin receptor 17410169 12782725 10398681 15208392
GeneOntology - response to auxin stimulus 9436980

Basic gene information ( show / hide contents )

Locus AT3G62980 | Chromosome: 3 | Strand: -
Description LRRs containing F-box protein, auxin receptor
Alias
TIR1( alias )
Gene model
AT3G62980.1 | From: 23284091 | To: 23287350
Sequence
AT3G62980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 15917798
auxin binding PMID: 15917797
ubiquitin-protein ligase activity PMID:
cellular_component
ubiquitin ligase complex PMID: 10398681
SCF ubiquitin ligase complex PMID: 10398681
biological_process
response to auxin stimulus PMID: 9436980
ubiquitin-dependent protein catabolic process PMID: 11019805
lateral root formation PMID: 9436980
response to molecule of bacterial origin PMID: 16627744
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
eta2-1 tir1-1 15208392 mutant
eta3 tir1-1 12782725 mutant
tir1 afb1 afb2 afb3 15992545 mutant
tir1 afb2 afb3 15992545 mutant
tir1-1 ask1-1 10398681 mutant
tir1 9436980 mutant
wxr1 tir1-1 20562234 mutant
wxr1 tir1-1 afb3-1 20562234 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G62980.1 
length: 2342 
miRNA : ath-miR393a
length: 22 
 
mfe: -38.6 kcal/mol 
p-value: 0.000084 
 
position  1711 
target 5' A                     U 
           GA CAAUGCGAUCCCUUUGGA  
           CU GUUACGCUAGGGAAACCU  
miRNA  3' C  A                    
 
 
target: AT3G62980.1 
length: 2342 
miRNA : ath-miR393b
length: 22 
 
mfe: -38.6 kcal/mol 
p-value: 0.000409 
 
position  1711 
target 5' A                     U 
           GA CAAUGCGAUCCCUUUGGA  
           CU GUUACGCUAGGGAAACCU  
miRNA  3' C  A                    
 
 
target: AT3G62980.1 
length: 2342 
miRNA : ath-miR781
length: 21 
 
mfe: -21.1 kcal/mol 
p-value: 0.270317 
 
position  2144 
target 5' A        A           U 
           GAG AUCU AGAGAGCUUUG  
           UUC UAGG UCUUUUGAGAU  
miRNA  3' A   A                U 
 
 
target: AT3G62980.1 
length: 2342 
miRNA : ath-miR852
length: 21 
 
mfe: -34.3 kcal/mol 
p-value: 0.000181 
 
position  988 
target 5' A                   G 
           GGAAUUGAGGUGCUUAUCU  
           UCUUGAUUCCGCGAAUAGA  
miRNA  3' G                   A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G62980AT1G04240negativeprotein degradationN/Amutance17900969
AT3G62980AT1G04550negativeprotein degradationN/Amutance17900969
AT3G62980AT1G15580negativeprotein degradationN/Amutance17900969
AT3G62980AT2G32410negativeprotein degradationN/Amutance17900969
AT3G62980AT2G38120negativeprotein degradationN/Amutance17900969
AT3G62980AT3G15540negativeprotein degradationN/Amutance17900969
AT3G62980AT4G14550negativeprotein degradationN/Amutance17900969
AT3G62980AT4G14560negativeprotein degradationN/Amutance17900969
AT3G62980AT5G03280PositiveotherN/AmolecularN/A
AT3G62980AT5G25890negativeprotein degradationN/Amutance17900969
AT3G62980AT5G43700negativeprotein degradationN/Amutance17900969
AT3G62980AUX3negativeprotein degradationN/Amutance17900969

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24415
AccessionTaxon
NP_563915Arabidopsis thaliana
NP_566800Arabidopsis thaliana
NP_567135 ( AT3G62980 )Arabidopsis thaliana
NP_567255Arabidopsis thaliana
NP_001052659Oryza sativa Japonica Group
NP_001054666Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_160001Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_440022Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1370051Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1960072Physcomitrella patens subsp. patens
29647.m002022Ricinus communis
29933.m001427Ricinus communis
30131.m006863Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF813834.9E-6140IPR022364F-box domain, Skp2-like
SMARTSM002567.29999789405563E-6950IPR001810F-box domain, cyclin-like