You are querying gene by "AT3G56860".

Locus: AT3G56860 Alias: UBA2A

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - abscisic acid mediated signaling 12181571

Basic gene information ( show / hide contents )

Locus AT3G56860 | Chromosome: 3 | Strand: -
Description abscisic acid mediated signaling
Alias
UBA2A( alias )
Gene model
AT3G56860.3 | From: 21059864 | To: 21063216
AT3G56860.1 | From: 21059868 | To: 21063216
AT3G56860.2 | From: 21061121 | To: 21063216
Sequence
AT3G56860.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G56860.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G56860.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
AU-rich element binding PMID: 0012024044
cellular_component
nucleus PMID: 0012024044
biological_process
abscisic acid mediated signaling PMID: 12181571
mRNA stabilization PMID: 0012024044
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G56860.1 
length: 2309 
miRNA : ath-miR414
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.000768 
 
position  288 
target 5' A               A    G 
           GAUGAUGGUGAUGAG AUGA  
           CUGCUACUACUACUU UACU  
miRNA  3' A               C      
 
 
target: AT3G56860.1 
length: 2309 
miRNA : ath-miR781
length: 21 
 
mfe: -23.2 kcal/mol 
p-value: 0.087821 
 
position  929 
target 5' A       A              A 
           UAAGUAU CUGGGAGAC CUAA  
           AUUCAUA GGUCUUUUG GAUU  
miRNA  3'                   A      
 
 
target: AT3G56860.2 
length: 1905 
miRNA : ath-miR414
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.000593 
 
position  288 
target 5' A               A    G 
           GAUGAUGGUGAUGAG AUGA  
           CUGCUACUACUACUU UACU  
miRNA  3' A               C      
 
 
target: AT3G56860.2 
length: 1905 
miRNA : ath-miR781
length: 21 
 
mfe: -23.2 kcal/mol 
p-value: 0.069496 
 
position  929 
target 5' A       A              A 
           UAAGUAU CUGGGAGAC CUAA  
           AUUCAUA GGUCUUUUG GAUU  
miRNA  3'                   A      
 
 
target: AT3G56860.3 
length: 2425 
miRNA : ath-miR414
length: 21 
 
mfe: -31.0 kcal/mol 
p-value: 0.000819 
 
position  288 
target 5' A               A    G 
           GAUGAUGGUGAUGAG AUGA  
           CUGCUACUACUACUU UACU  
miRNA  3' A               C      
 
 
target: AT3G56860.3 
length: 2425 
miRNA : ath-miR781
length: 21 
 
mfe: -23.2 kcal/mol 
p-value: 0.093059 
 
position  929 
target 5' A       A              A 
           UAAGUAU CUGGGAGAC CUAA  
           AUUCAUA GGUCUUUUG GAUU  
miRNA  3'                   A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16780
AccessionTaxon
NP_001078035Arabidopsis thaliana
NP_181639Arabidopsis thaliana
NP_567042Arabidopsis thaliana
NP_850710 ( AT3G56860 )Arabidopsis thaliana
NP_850711Arabidopsis thaliana
NP_001042672Oryza sativa Japonica Group
30006.m000276Ricinus communis
30099.m001684Ricinus communis
NP_188119Arabidopsis thaliana
NP_974317Arabidopsis thaliana
NP_001043567Oryza sativa Japonica Group
gw1.188.84.1Physcomitrella patens subsp. patens
gw1.70.172.1Physcomitrella patens subsp. patens
29900.m001607Ricinus communis
gw1.59.258.1Physcomitrella patens subsp. patens
NP_001054022Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3305.899988094056823E-18138215IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0140217IPR000504RNA recognition motif, RNP-1
SMARTSM003606.19998763505952E-19141213IPR000504RNA recognition motif, RNP-1
PfamPF000766.800000000000011E-12142208IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3301.800001492871922E-16245351IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0245321IPR000504RNA recognition motif, RNP-1
SMARTSM003601.8000014928719635E-15246318IPR000504RNA recognition motif, RNP-1
PfamPF000765.500000000000002E-9247315IPR000504RNA recognition motif, RNP-1