You are querying gene by "AT3G54720".

Locus: AT3G54720 Alias: AMP1

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. 10409511

Basic gene information ( show / hide contents )

Locus AT3G54720 | Chromosome: 3 | Strand: -
Description Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.
Alias
AMP1( alias )
COP2( alias )
HPT( alias )
PT( alias )
Gene model
AT3G54720.1 | From: 20265703 | To: 20268826
Sequence
AT3G54720.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
glutamate carboxypeptidase activity PMID: 11549767
dipeptidase activity PMID: 11549767
cellular_component
cellular_component_unknown PMID:
biological_process
negative regulation of flower development PMID:
flower development PMID: 17553903
meristem development PMID: 17553903
proteolysis PMID:
leaf vascular tissue pattern formation PMID: 17553903
embryonic development PMID: 17553903
root development PMID: 17553903
photomorphogenesis PMID: 0012271066
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
amp1-1 11549767 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR159a
length: 21 
 
mfe: -25.4 kcal/mol 
p-value: 0.062364 
 
position  1802 
target 5' A              U G     G 
           AGAGUUCUCUUUGG U CCAAA  
           UCUCGAGGGAAGUU A GGUUU  
miRNA  3' A                        
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR159b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.055359 
 
position  1801 
target 5' C               U G     G 
           AAGAGUUCUCUUUGG U CCAAA  
           UUCUCGAGGGAAGUU A GGUUU  
miRNA  3'                           
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR777
length: 22 
 
mfe: -25.5 kcal/mol 
p-value: 0.031697 
 
position  933 
target 5' G                  U    U 
           GAGUGGCGGAAUUCGG G CGUG  
           UUCGUUGCUUUGAGUU C GCAU  
miRNA  3'                  A        
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR854a
length: 21 
 
mfe: -32.1 kcal/mol 
p-value: 0.007034 
 
position  178 
target 5' A         U            G 
           CUCCUCCUC UCUAUUUUC UC  
           GAGGAGGAG GGAUAGGAG AG  
miRNA  3'                     U    
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR854b
length: 21 
 
mfe: -32.1 kcal/mol 
p-value: 0.005328 
 
position  178 
target 5' A         U            G 
           CUCCUCCUC UCUAUUUUC UC  
           GAGGAGGAG GGAUAGGAG AG  
miRNA  3'                     U    
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR854c
length: 21 
 
mfe: -32.1 kcal/mol 
p-value: 0.006448 
 
position  178 
target 5' A         U            G 
           CUCCUCCUC UCUAUUUUC UC  
           GAGGAGGAG GGAUAGGAG AG  
miRNA  3'                     U    
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR854d
length: 21 
 
mfe: -32.1 kcal/mol 
p-value: 0.005523 
 
position  178 
target 5' A         U            G 
           CUCCUCCUC UCUAUUUUC UC  
           GAGGAGGAG GGAUAGGAG AG  
miRNA  3'                     U    
 
 
target: AT3G54720.1 
length: 2278 
miRNA : ath-miR854e
length: 21 
 
mfe: -32.1 kcal/mol 
p-value: 0.006754 
 
position  178 
target 5' A         U            G 
           CUCCUCCUC UCUAUUUUC UC  
           GAGGAGGAG GGAUAGGAG AG  
miRNA  3'                     U    
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G54720AT1G66340negativeotherN/Amutance10409511
AT3G54720AT2G39940negativeotherN/Amutance10409511
AT3G54720AT2G40940negativeotherN/Amutance10409511
AT3G54720AT3G04580negativeotherN/Amutance10409511
AT3G54720AT3G23150negativeotherN/Amutance10409511

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11718
AccessionTaxon
NP_197475Arabidopsis thaliana
NP_001044202Oryza sativa Japonica Group
NP_001044217Oryza sativa Japonica Group
e_gw1.184.39.1Physcomitrella patens subsp. patens
e_gw1.387.4.1Physcomitrella patens subsp. patens
29912.m005425Ricinus communis
NP_567007 ( AT3G54720 )Arabidopsis thaliana
NP_001051516Oryza sativa Japonica Group
29333.m001105Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF022250.08500000000000003162230IPR003137Protease-associated PA
PfamPF043893.799999999999999E-15350521IPR007484Peptidase M28
SuperFamilySSF476721.4E-30544704IPR007365Transferrin receptor-like, dimerisation
PfamPF042533.7E-17580701IPR007365Transferrin receptor-like, dimerisation