You are querying gene by "AT3G54010".

Locus: AT3G54010 Alias: DEI1

Hormone Evidence Function category Gene Description PMID
cytokininGeneOntology - response to cytokinin stimulus 9449673

Basic gene information ( show / hide contents )

Locus AT3G54010 | Chromosome: 3 | Strand: +
Description response to cytokinin stimulus
Alias
DEI1( alias )
PAS1( alias )
Gene model
AT3G54010.1 | From: 20011839 | To: 20016161
AT3G54010.2 | From: 20011839 | To: 20016161
Sequence
AT3G54010.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G54010.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
peptidyl-prolyl cis-trans isomerase activity PMID:
FK506 binding PMID:
cellular_component
nucleus PMID: 9566922
biological_process
unidimensional cell growth PMID: 9449673
cell differentiation PMID: 9449673
embryonic development PMID: 9449673
response to cytokinin stimulus PMID: 9449673
root development PMID: 9449673
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR162a
length: 21 
 
mfe: -25.9 kcal/mol 
p-value: 0.014118 
 
position  404 
target 5' U     G G      G  C   U 
           CUGGA G AGAGGU UA CGA  
           GACCU C UCUCCA AU GCU  
miRNA  3'       A G      A  A     
 
 
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR162b
length: 21 
 
mfe: -25.9 kcal/mol 
p-value: 0.011700 
 
position  404 
target 5' U     G G      G  C   U 
           CUGGA G AGAGGU UA CGA  
           GACCU C UCUCCA AU GCU  
miRNA  3'       A G      A  A     
 
 
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR781
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.115981 
 
position  650 
target 5' G    C   A            A 
           GGGU AUC AGAAGAUUCUAA  
           UUCA UAG UCUUUUGAGAUU  
miRNA  3' A        G              
 
 
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR834
length: 21 
 
mfe: -29.4 kcal/mol 
p-value: 0.010642 
 
position  1737 
target 5' A   G               G 
           UGC ACCGCUGCU CUAUU  
           AUG UGGCGAUGA GAUGG  
miRNA  3' A   G         C     U 
 
 
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.060714 
 
position  1327 
target 5' C       C           A 
           GAAAC G CAAGAGACUGG  
           CUUUG U GUUCUUUGACU  
miRNA  3' A     C U           A 
 
 
target: AT3G54010.1 
length: 2209 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.038192 
 
position  1767 
target 5' A                G  G 
           GAAG GAACAGGAAGC GA  
           CUUU CUUGUUCUUUG CU  
miRNA  3' A    G           A  A 
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR162a
length: 21 
 
mfe: -25.9 kcal/mol 
p-value: 0.014622 
 
position  474 
target 5' U     G G      G  C   U 
           CUGGA G AGAGGU UA CGA  
           GACCU C UCUCCA AU GCU  
miRNA  3'       A G      A  A     
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR162b
length: 21 
 
mfe: -25.9 kcal/mol 
p-value: 0.012173 
 
position  474 
target 5' U     G G      G  C   U 
           CUGGA G AGAGGU UA CGA  
           GACCU C UCUCCA AU GCU  
miRNA  3'       A G      A  A     
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR781
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.120197 
 
position  720 
target 5' G    C   A            A 
           GGGU AUC AGAAGAUUCUAA  
           UUCA UAG UCUUUUGAGAUU  
miRNA  3' A        G              
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR834
length: 21 
 
mfe: -29.4 kcal/mol 
p-value: 0.011008 
 
position  1807 
target 5' A   G               G 
           UGC ACCGCUGCU CUAUU  
           AUG UGGCGAUGA GAUGG  
miRNA  3' A   G         C     U 
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.062453 
 
position  1397 
target 5' C       C           A 
           GAAAC G CAAGAGACUGG  
           CUUUG U GUUCUUUGACU  
miRNA  3' A     C U           A 
 
 
target: AT3G54010.2 
length: 2279 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.039352 
 
position  1837 
target 5' A                G  G 
           GAAG GAACAGGAAGC GA  
           CUUU CUUGUUCUUUG CU  
miRNA  3' A    G           A  A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G54010AT3G48100negativeotherN/Amolecular12747832
AT3G54010AT4G14560PositiveotherN/Amolecular12747832
AT3G54010AT5G43700PositiveotherN/Amolecular12747832
AT3G54010AT5G62920negativeotherN/Amolecular12747832

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_41046
AccessionTaxon
NP_566993 ( AT3G54010 )Arabidopsis thaliana
NP_850701Arabidopsis thaliana
171523Chlamydomonas reinhardtii
NP_001050182Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_02.0001000173Ostreococcus tauri
estExt_fgenesh2_pg.C_910111Physcomitrella patens subsp. patens
29872.m000536Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF002540.057000000000000016154IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PROSITEPS500590.0157IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PfamPF002548.5e-1344144IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PROSITEPS5005915.30351147IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PANTHERPTHR105160.0194474IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PfamPF002541.9000000000000002E-10200290IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PROSITEPS500590.0201293IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PANTHERPTHR105169.8e-181284564IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PfamPF002543e-13290380IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
PROSITEPS5005915.831291383IPR001179Peptidyl-prolyl cis-trans isomerase, FKBP-type
Gene3DG3DSA:1.25.40.104.699982625131889E-34302468IPR011990Tetratricopeptide-like helical
PROSITEPS500050.0310343IPR019734Tetratricopeptide repeat
PROSITEPS500050.0359392IPR019734Tetratricopeptide repeat
PROSITEPS502930.0359426IPR013026Tetratricopeptide repeat-containing
Gene3DG3DSA:1.25.40.104.5e-34392558IPR011990Tetratricopeptide-like helical
PROSITEPS500050.0393426IPR019734Tetratricopeptide repeat
SMARTSM000281.7e+02400433IPR019734Tetratricopeptide repeat
PROSITEPS500055.251400433IPR019734Tetratricopeptide repeat
SMARTSM000280.032449482IPR019734Tetratricopeptide repeat
PROSITEPS500057.051449482IPR019734Tetratricopeptide repeat
PROSITEPS5029315.425449516IPR013026Tetratricopeptide repeat-containing
SMARTSM000280.08483516IPR019734Tetratricopeptide repeat
PROSITEPS500059.086483516IPR019734Tetratricopeptide repeat