You are querying gene by "AT3G53710".

Locus: AT3G53710 Alias: AGD6

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT3G53710 | Chromosome: 3 | Strand: -
Description A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Alias
AGD6( alias )
Gene model
AT3G53710.1 | From: 19914291 | To: 19916467
AT3G53710.2 | From: 19914317 | To: 19916409
Sequence
AT3G53710.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G53710.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
cellular_component
nucleus PMID:
biological_process
regulation of ARF GTPase activity PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G53710.1 
length: 1791 
miRNA : ath-miR865-5p
length: 21 
 
mfe: -20.9 kcal/mol 
p-value: 0.075535 
 
position  17 
target 5' U G                 G 
           U GAUUAGAUCUG AUUCA  
           A UUAAUCUAGGU UAAGU  
miRNA  3' G G           U     A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11303
AccessionTaxon
NP_001030854 ( AT3G53710 )Arabidopsis thaliana
NP_001031503Arabidopsis thaliana
NP_181291Arabidopsis thaliana
NP_190939Arabidopsis thaliana
149716Chlamydomonas reinhardtii
NP_001049726Oryza sativa Japonica Group
e_gw1.05.00.514.1Ostreococcus tauri
estExt_Genewise1.C_510047Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1500014Physcomitrella patens subsp. patens
30025.m000603Ricinus communis
0300010357Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF578632.0E-382124IPR001164Arf GTPase activating protein
SMARTSM001057.0999832511256E-414120IPR001164Arf GTPase activating protein
PROSITEPS501150.04120IPR001164Arf GTPase activating protein
PfamPF014121.9000000000000044E-325110IPR001164Arf GTPase activating protein
PRINTSPR004054.099995990457837E-231635IPR001164Arf GTPase activating protein
PRINTSPR004054.099995990457837E-233552IPR001164Arf GTPase activating protein
PRINTSPR004054.099995990457837E-235677IPR001164Arf GTPase activating protein