You are querying gene by "AT3G53110".

Locus: AT3G53110 Alias: LOS4

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 15598798

Basic gene information ( show / hide contents )

Locus AT3G53110 | Chromosome: 3 | Strand: +
Description response to abscisic acid stimulus
Alias
LOS4( alias )
Gene model
AT3G53110.1 | From: 19698718 | To: 19701639
Sequence
AT3G53110.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA helicase activity PMID: 0012165572
ATP-dependent helicase activity PMID:
RNA-dependent ATPase activity PMID: 15598798
cellular_component
nuclear envelope PMID: 15598798
cytoplasm PMID: 15598798
biological_process
poly(A)+ mRNA export from nucleus PMID: 15598798
response to cold PMID: 0012165572
response to heat PMID: 15598798
response to abscisic acid stimulus PMID: 15598798
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G53110.1 
length: 1860 
miRNA : ath-miR414
length: 21 
 
mfe: -33.8 kcal/mol 
p-value: 0.000155 
 
position  257 
target 5' A                 A  A 
           GAUGAUGAUGAUGAAGA GA  
           CUGCUACUACUACUUCU CU  
miRNA  3' A                 A    
 
 
target: AT3G53110.1 
length: 1860 
miRNA : ath-miR831
length: 22 
 
mfe: -24.9 kcal/mol 
p-value: 0.026045 
 
position  1503 
target 5' A      U        A      A 
           AAGAGG G AUGGAG AGAUCG  
           UUCUUC C UGCUUC UCUAGU  
miRNA  3' G      U A               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11610
AccessionTaxon
NP_190879 ( AT3G53110 )Arabidopsis thaliana
100494Chlamydomonas reinhardtii
NP_001049020Oryza sativa Japonica Group
e_gw1.135.21.1Physcomitrella patens subsp. patens
e_gw1.492.1.1Physcomitrella patens subsp. patens
30078.m002234Ricinus communis
fgenesh1_pg.C_Chr_07.0001000180Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS511950.091120IPR014014RNA helicase, DEAD-box type, Q motif
SMARTSM004876.600027511415624E-42111316IPR014001DEAD-like helicase, N-terminal
PfamPF002702.4999999999999964E-32117289IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
PROSITEPS511920.0125301IPR014021Helicase, superfamily 1/2, ATP-binding domain
PROSITEPS511940.0329483IPR001650DNA/RNA helicase, C-terminal
SMARTSM004907.7999830412557085E-25354442IPR001650DNA/RNA helicase, C-terminal
PfamPF002713.900000000000007E-19359442IPR001650DNA/RNA helicase, C-terminal