You are querying gene by "AT3G53110".

Locus: AT3G53110 Alias: LOS4

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 15598798

Basic gene information ( show / hide contents )

Locus AT3G53110 | Chromosome: 3 | Strand: +
Description response to abscisic acid stimulus
LOS4( alias )
Gene model
AT3G53110.1 | From: 19698718 | To: 19701639
AT3G53110.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
RNA helicase activity PMID: 0012165572
ATP-dependent helicase activity PMID:
RNA-dependent ATPase activity PMID: 15598798
nuclear envelope PMID: 15598798
cytoplasm PMID: 15598798
poly(A)+ mRNA export from nucleus PMID: 15598798
response to cold PMID: 0012165572
response to heat PMID: 15598798
response to abscisic acid stimulus PMID: 15598798
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT3G53110.1 
length: 1860 
miRNA : ath-miR414
length: 21 
mfe: -33.8 kcal/mol 
p-value: 0.000155 
position  257 
target 5' A                 A  A 
miRNA  3' A                 A    
target: AT3G53110.1 
length: 1860 
miRNA : ath-miR831
length: 22 
mfe: -24.9 kcal/mol 
p-value: 0.026045 
position  1503 
target 5' A      U        A      A 
miRNA  3' G      U A               

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11610
NP_190879 ( AT3G53110 )Arabidopsis thaliana
100494Chlamydomonas reinhardtii
NP_001049020Oryza sativa Japonica Group
e_gw1.135.21.1Physcomitrella patens subsp. patens
e_gw1.492.1.1Physcomitrella patens subsp. patens
30078.m002234Ricinus communis
fgenesh1_pg.C_Chr_07.0001000180Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS511950.091120IPR014014RNA helicase, DEAD-box type, Q motif
SMARTSM004876.600027511415624E-42111316IPR014001DEAD-like helicase, N-terminal
PfamPF002702.4999999999999964E-32117289IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
PROSITEPS511920.0125301IPR014021Helicase, superfamily 1/2, ATP-binding domain
PROSITEPS511940.0329483IPR001650DNA/RNA helicase, C-terminal
SMARTSM004907.7999830412557085E-25354442IPR001650DNA/RNA helicase, C-terminal
PfamPF002713.900000000000007E-19359442IPR001650DNA/RNA helicase, C-terminal