You are querying gene by "AT3G52400".

Locus: AT3G52400 Alias: ATSYP122

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - salicylic acid mediated signaling pathway 17241452
jasmonic acidGeneOntology - jasmonic acid mediated signaling pathway 17241452

Basic gene information ( show / hide contents )

Locus AT3G52400 | Chromosome: 3 | Strand: -
Description jasmonic acid mediated signaling pathway
Alias
ATSYP122( alias )
SYP122( alias )
Gene model
AT3G52400.1 | From: 19436612 | To: 19438119
Sequence
AT3G52400.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
SNAP receptor activity PMID: 11115874
cellular_component
plasma membrane PMID: 15342780
biological_process
intracellular protein transport PMID: 11115874
defense response to fungus PMID: 15342780
protein targeting to membrane PMID: 17662029
salicylic acid mediated signaling pathway PMID: 17241452
jasmonic acid mediated signaling pathway PMID: 17241452
negative regulation of programmed cell death PMID: 17241452
membrane fusion PMID: 11115874
negative regulation of cellular defense response PMID: 17241452
regulation of plant-type hypersensitive response PMID: 17241452
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
SNARE interactions in vesicular transport syntaxin 2/3/4
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G52400.1 
length: 1336 
miRNA : ath-miR397a
length: 21 
 
mfe: -28.9 kcal/mol 
p-value: 0.003699 
 
position  387 
target 5' A     C               C 
           CGUCA UGCUGCGCUUAA GA  
           GUAGU GCGACGUGAGUU CU  
miRNA  3'       U            A    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM005035.200000890033361E-2838164IPR006011Syntaxin, N-terminal
SuperFamilySSF476619.4E-4740248IPR010989t-SNARE
PfamPF008043.2E-743149IPR006011Syntaxin, N-terminal
SMARTSM003971.6000024069599662E-17208275IPR000727Target SNARE coiled-coil domain
PROSITEPS501920.0213275IPR000727Target SNARE coiled-coil domain
PfamPF057391.9999999999999944E-18218280IPR000727Target SNARE coiled-coil domain
PROSITEPS009140.0219258IPR006012Syntaxin/epimorphin, conserved site