You are querying gene by "AT3G52400".

Locus: AT3G52400 Alias: ATSYP122

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - salicylic acid mediated signaling pathway 17241452
jasmonic acidGeneOntology - jasmonic acid mediated signaling pathway 17241452

Basic gene information ( show / hide contents )

Locus AT3G52400 | Chromosome: 3 | Strand: -
Description jasmonic acid mediated signaling pathway
ATSYP122( alias )
SYP122( alias )
Gene model
AT3G52400.1 | From: 19436612 | To: 19438119
AT3G52400.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
SNAP receptor activity PMID: 11115874
plasma membrane PMID: 15342780
intracellular protein transport PMID: 11115874
defense response to fungus PMID: 15342780
protein targeting to membrane PMID: 17662029
salicylic acid mediated signaling pathway PMID: 17241452
jasmonic acid mediated signaling pathway PMID: 17241452
negative regulation of programmed cell death PMID: 17241452
membrane fusion PMID: 11115874
negative regulation of cellular defense response PMID: 17241452
regulation of plant-type hypersensitive response PMID: 17241452
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
SNARE interactions in vesicular transport syntaxin 2/3/4
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT3G52400.1 
length: 1336 
miRNA : ath-miR397a
length: 21 
mfe: -28.9 kcal/mol 
p-value: 0.003699 
position  387 
target 5' A     C               C 
miRNA  3'       U            A    

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM005035.200000890033361E-2838164IPR006011Syntaxin, N-terminal
PfamPF008043.2E-743149IPR006011Syntaxin, N-terminal
SMARTSM003971.6000024069599662E-17208275IPR000727Target SNARE coiled-coil domain
PROSITEPS501920.0213275IPR000727Target SNARE coiled-coil domain
PfamPF057391.9999999999999944E-18218280IPR000727Target SNARE coiled-coil domain
PROSITEPS009140.0219258IPR006012Syntaxin/epimorphin, conserved site