You are querying gene by "AT3G49690".

Locus: AT3G49690 Alias: ATMYB84

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT3G49690 | Chromosome: 3 | Strand: +
Description response to salicylic acid stimulus
Alias
ATMYB84( alias )
MYB84( alias )
RAX3( alias )
Gene model
AT3G49690.1 | From: 18438720 | To: 18440186
Sequence
AT3G49690.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to salicylic acid stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID: 9839469
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR172c
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.007194 
 
position  834 
target 5' C     U              A 
           CU CA CAUCAUCAAGAUUC  
           GA GU GUAGUAGUUCUAAG  
miRNA  3'    C  C              A 
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR172d
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.008729 
 
position  834 
target 5' C     U              A 
           CU CA CAUCAUCAAGAUUC  
           GA GU GUAGUAGUUCUAAG  
miRNA  3'    C  C              A 
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR395b
length: 21 
 
mfe: -28.6 kcal/mol 
p-value: 0.017266 
 
position  1047 
target 5' G         A            C 
           GAG CCUCC CAAGUACUUCGG  
           CUC GGGGG GUUUGUGAAGUC  
miRNA  3'     A                    
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR395c
length: 21 
 
mfe: -28.6 kcal/mol 
p-value: 0.014114 
 
position  1047 
target 5' G         A            C 
           GAG CCUCC CAAGUACUUCGG  
           CUC GGGGG GUUUGUGAAGUC  
miRNA  3'     A                    
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR395f
length: 21 
 
mfe: -28.6 kcal/mol 
p-value: 0.010982 
 
position  1047 
target 5' G         A            C 
           GAG CCUCC CAAGUACUUCGG  
           CUC GGGGG GUUUGUGAAGUC  
miRNA  3'     A                    
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR414
length: 21 
 
mfe: -32.8 kcal/mol 
p-value: 0.000134 
 
position  609 
target 5' A                     C 
           UGAUGGUGAUGAUGAAGA GA  
           ACUGCUACUACUACUUCU CU  
miRNA  3'                    A    
 
 
target: AT3G49690.1 
length: 1240 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.045439 
 
position  594 
target 5' A                     G 
           UGGAGC AGCAAGAGA UGAU  
           ACUUUG UUGUUCUUU ACUA  
miRNA  3'        C         G      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58767
AccessionTaxon
NP_190538 ( AT3G49690 )Arabidopsis thaliana
NP_201380Arabidopsis thaliana
NP_001051406Oryza sativa Japonica Group
29825.m000322Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106411.599988353136592E-903226IPR015495Myb transcription factor
PROSITEPS512940.0962IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.609.300000484759622E-131265IPR012287Homeodomain-related
SMARTSM007176.000003616381633E-111364IPR001005SANT, DNA-binding
PfamPF002491.9999999999999993E-91462IPR014778Myb, DNA-binding
SuperFamilySSF466892.1E-201483IPR009057Homeodomain-like
PROSITEPS512940.063117IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SuperFamilySSF466895.4E-1365119IPR009057Homeodomain-like
SMARTSM007178.299995811800066E-1167115IPR001005SANT, DNA-binding
Gene3DG3DSA:1.10.10.609.300000484759623E-1669117IPR012287Homeodomain-related
PfamPF002491.8000000000000018E-669111IPR014778Myb, DNA-binding