You are querying gene by "AT3G48430".

Locus: AT3G48430 Alias: REF6

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT3G48430 | Chromosome: 3 | Strand: +
Description
Alias
REF6( alias )
Gene model
AT3G48430.1 | From: 17946594 | To: 17951731
Sequence
AT3G48430.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID:
cellular_component
intracellular PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR1886.3
length: 21 
 
mfe: -19.3 kcal/mol 
p-value: 0.204183 
 
position  2890 
target 5' A  G            C    G 
           GG AAGAUGGAGUUU UGAU  
           UC UUCUACUUUAGA AUUA  
miRNA  3'    A            A    A 
 
 
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR395a
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.075427 
 
position  1343 
target 5' A                A    U 
           GAGUU CCUCAGAUAU UCAG  
           CUCAA GGGGUUUGUG AGUC  
miRNA  3'       G          A      
 
 
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR395d
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.079304 
 
position  1343 
target 5' A                A    U 
           GAGUU CCUCAGAUAU UCAG  
           CUCAA GGGGUUUGUG AGUC  
miRNA  3'       G          A      
 
 
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR395e
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.095530 
 
position  1343 
target 5' A                A    U 
           GAGUU CCUCAGAUAU UCAG  
           CUCAA GGGGUUUGUG AGUC  
miRNA  3'       G          A      
 
 
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR413
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.138935 
 
position  563 
target 5' C   G    G       U   G 
           UGC AGGA GAGAGAG CUG  
           ACG UCUU UUCUCUU GAU  
miRNA  3' C        G       U   A 
 
 
target: AT3G48430.1 
length: 4373 
miRNA : ath-miR414
length: 21 
 
mfe: -30.3 kcal/mol 
p-value: 0.002302 
 
position  3176 
target 5' A    C          U     U 
           UGAC AUGAUGAUGA GAUGA  
           ACUG UACUACUACU CUACU  
miRNA  3'      C          U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_70992
AccessionTaxon
NP_680116 ( AT3G48430 )Arabidopsis thaliana
NP_001066572Oryza sativa Japonica Group
30147.m013814Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM005456.39998633403535E-181960IPR003349Transcription factor jumonji, JmjN
PROSITEPS511830.02061IPR003349Transcription factor jumonji, JmjN
PfamPF023755.1000000000000076E-112154IPR003349Transcription factor jumonji, JmjN
SMARTSM005582.1000026783402984E-54200369IPR003347Transcription factor jumonji/aspartyl beta-hydroxylase
PROSITEPS511840.0203369IPR003347Transcription factor jumonji/aspartyl beta-hydroxylase
PfamPF023734.599999999999999E-35233352IPR013129Transcription factor jumonji
SMARTSM003556.89999963379700912431265IPR015880Zinc finger, C2H2-like
SMARTSM003550.00689999963379700912661290IPR015880Zinc finger, C2H2-like
PROSITEPS501570.012661295IPR007087Zinc finger, C2H2-type
PROSITEPS000280.012681290IPR007087Zinc finger, C2H2-type
Gene3DG3DSA:3.30.160.603.399999724377187E-512921323IPR013087Zinc finger, C2H2-type/integrase, DNA-binding
SMARTSM003550.001299999958354356812961320IPR015880Zinc finger, C2H2-like
PROSITEPS501570.012961325IPR007087Zinc finger, C2H2-type
PROSITEPS000280.012981320IPR007087Zinc finger, C2H2-type
SMARTSM003550.97000000036884413261352IPR015880Zinc finger, C2H2-like
PROSITEPS501570.013261357IPR007087Zinc finger, C2H2-type
PROSITEPS000280.013281352IPR007087Zinc finger, C2H2-type