You are querying gene by "AT3G47620".

Locus: AT3G47620 Alias: AtTCP14

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 17953649
gibberellinGeneOntology - response to gibberellin stimulus 17953649

Basic gene information ( show / hide contents )

Locus AT3G47620 | Chromosome: 3 | Strand: +
Description response to abscisic acid stimulus
Alias
AtTCP14( alias )
Gene model
AT3G47620.1 | From: 17569834 | To: 17571752
Sequence
AT3G47620.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
cellular_component_unknown PMID:
biological_process
response to gibberellin stimulus PMID: 17953649
regulation of transcription PMID: 11118137
regulation of seed germination PMID: 17953649
response to abscisic acid stimulus PMID: 17953649
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR414
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.002796 
 
position  1591 
target 5' U   A              G  U 
           UGG GGUGGUGAUGAGGA GA  
           ACU CUACUACUACUUCU CU  
miRNA  3'     G              A    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR836
length: 24 
 
mfe: -30.2 kcal/mol 
p-value: 0.011056 
 
position  205 
target 5' A                A G    G 
           CA GCGUCGGAGGAGG G AGGA  
           GU CGUAGUUUCCUUU U UCCU  
miRNA  3' G  G             G G      
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR847
length: 21 
 
mfe: -30.3 kcal/mol 
p-value: 0.007268 
 
position  208 
target 5' G                     G 
           CGUC GGAGGAGGAGGAG GA  
           GUAG UCUUCUUCUCCUC CU  
miRNA  3'      U             A    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.013387 
 
position  1 
target 5'    U                  U 
           UC CUCUUUCUUAUCCUC UC  
           AG GAGGAGGGAUAGGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854a
length: 21 
 
mfe: -35.2 kcal/mol 
p-value: 0.001770 
 
position  337 
target 5' C                     U 
           CUCCUCCUCUCUAUUUUC UC  
           GAGGAGGAGGGAUAGGAG AG  
miRNA  3'                    U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.011443 
 
position  1 
target 5'    U                  U 
           UC CUCUUUCUUAUCCUC UC  
           AG GAGGAGGGAUAGGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854b
length: 21 
 
mfe: -35.2 kcal/mol 
p-value: 0.001035 
 
position  337 
target 5' C                     U 
           CUCCUCCUCUCUAUUUUC UC  
           GAGGAGGAGGGAUAGGAG AG  
miRNA  3'                    U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.012924 
 
position  1 
target 5'    U                  U 
           UC CUCUUUCUUAUCCUC UC  
           AG GAGGAGGGAUAGGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854c
length: 21 
 
mfe: -35.2 kcal/mol 
p-value: 0.001452 
 
position  337 
target 5' C                     U 
           CUCCUCCUCUCUAUUUUC UC  
           GAGGAGGAGGGAUAGGAG AG  
miRNA  3'                    U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.011718 
 
position  1 
target 5'    U                  U 
           UC CUCUUUCUUAUCCUC UC  
           AG GAGGAGGGAUAGGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854d
length: 21 
 
mfe: -35.2 kcal/mol 
p-value: 0.001101 
 
position  337 
target 5' C                     U 
           CUCCUCCUCUCUAUUUUC UC  
           GAGGAGGAGGGAUAGGAG AG  
miRNA  3'                    U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.013443 
 
position  1 
target 5'    U                  U 
           UC CUCUUUCUUAUCCUC UC  
           AG GAGGAGGGAUAGGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G47620.1 
length: 1919 
miRNA : ath-miR854e
length: 21 
 
mfe: -35.2 kcal/mol 
p-value: 0.001543 
 
position  337 
target 5' C                     U 
           CUCCUCCUCUCUAUUUUC UC  
           GAGGAGGAGGGAUAGGAG AG  
miRNA  3'                    U    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_21007
AccessionTaxon
NP_001077739Arabidopsis thaliana
NP_176107Arabidopsis thaliana
NP_001065880Oryza sativa Japonica Group
NP_001066282Oryza sativa Japonica Group
29728.m000800Ricinus communis
30093.m000364Ricinus communis
NP_174789Arabidopsis thaliana
NP_177346Arabidopsis thaliana
NP_190346 ( AT3G47620 )Arabidopsis thaliana
NP_001048115Oryza sativa Japonica Group
NP_001057205Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_3560021Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4460008Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_670100Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_348000004Physcomitrella patens subsp. patens
29813.m001457Ricinus communis
30147.m014114Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF036344.399999999999965E-37111289IPR005333Transcription factor, TCP
PROSITEPS513690.0117171IPR017887Transcription factor TCP subgroup