You are querying gene by "AT3G46590".

Locus: AT3G46590 Alias: ATTRP2

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
ethyleneGeneOntology - response to ethylene stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT3G46590 | Chromosome: 3 | Strand: +
Description response to jasmonic acid stimulus
Alias
ATTRP2( alias )
TRFL1( alias )
Gene model
AT3G46590.1 | From: 17163760 | To: 17167170
AT3G46590.2 | From: 17163760 | To: 17167212
AT3G46590.3 | From: 17163760 | To: 17167151
Sequence
AT3G46590.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G46590.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G46590.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
telomeric DNA binding PMID: 15688221
DNA binding PMID:
DNA bending activity PMID: 15688221
cellular_component
nucleus PMID:
biological_process
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G46590.1 
length: 2274 
miRNA : ath-miR775
length: 20 
 
mfe: -26.6 kcal/mol 
p-value: 0.024066 
 
position  977 
target 5' U                    A 
           UGGCA U CUAGACAUUGGA  
           ACCGU A GAUCUGUAGCUU  
miRNA  3'       G C              
 
 
target: AT3G46590.2 
length: 2319 
miRNA : ath-miR775
length: 20 
 
mfe: -26.6 kcal/mol 
p-value: 0.024667 
 
position  980 
target 5' U                    A 
           UGGCA U CUAGACAUUGGA  
           ACCGU A GAUCUGUAGCUU  
miRNA  3'       G C              
 
 
target: AT3G46590.3 
length: 2240 
miRNA : ath-miR775
length: 20 
 
mfe: -26.6 kcal/mol 
p-value: 0.023612 
 
position  980 
target 5' U                    A 
           UGGCA U CUAGACAUUGGA  
           ACCGU A GAUCUGUAGCUU  
miRNA  3'       G C              
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_33909
AccessionTaxon
NP_001030821Arabidopsis thaliana
NP_001030822Arabidopsis thaliana
NP_001078770Arabidopsis thaliana
NP_001078771Arabidopsis thaliana
NP_190243 ( AT3G46590 )Arabidopsis thaliana
NP_200751Arabidopsis thaliana
NP_851221Arabidopsis thaliana
e_gw1.132.51.1Physcomitrella patens subsp. patens
gw1.98.100.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS500530.0279347IPR019955Ubiquitin supergroup
PROSITEPS500530.0284352IPR019955Ubiquitin supergroup
PROSITEPS500539.809285353IPR019955Ubiquitin supergroup
Gene3DG3DSA:1.10.10.603.0999994589936886E-9438508IPR012287Homeodomain-related
SuperFamilySSF466891.5E-6440508IPR009057Homeodomain-like
PROSITEPS512940.0442501IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.603.0999994589936886E-9443513IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.602.9e-09444514IPR012287Homeodomain-related
SuperFamilySSF466891.5E-6445513IPR009057Homeodomain-like
SMARTSM007173.099999458993703E-7446499IPR001005SANT, DNA-binding
SuperFamilySSF466891.5e-06446514IPR009057Homeodomain-like
PROSITEPS512940.0447506IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS5129415.568448507IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007173.099999458993703E-7451504IPR001005SANT, DNA-binding
SMARTSM007175.4e-07452505IPR001005SANT, DNA-binding