You are querying gene by "AT3G28860".

Locus: AT3G28860 Alias: ATMDR1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone transportion one of multidrug resistance (MDR)-like ABC transporters 17557805 17557807
GeneOntology - response to auxin stimulus 15908594

Basic gene information ( show / hide contents )

Locus AT3G28860 | Chromosome: 3 | Strand: -
Description one of multidrug resistance (MDR)-like ABC transporters
Alias
ATMDR1( alias )
ATMDR11( alias )
ATPGP19( alias )
MDR1( alias )
MDR11( alias )
PGP19( alias )
Gene model
AT3G28860.1 | From: 10871275 | To: 10878743
Sequence
AT3G28860.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ATPase activity, coupled to transmembrane movement of substances PMID:
auxin efflux transmembrane transporter activity PMID: 16601150
cellular_component
plasma membrane PMID: 16618929
biological_process
response to auxin stimulus PMID: 15908594
positive gravitropism PMID: 15908594
response to blue light PMID: 15908594
regulation of cell size PMID: 15908594
lateral root development PMID: 17557807
photomorphogenesis PMID: 15908594
root development PMID: 17557805
anthocyanin accumulation in tissues in response to UV light PMID: 15908594
auxin polar transport PMID: 11701880
response to far red light PMID: 15908594
response to red or far red light PMID: 15908594
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
mdr1 17557807 mutant
mdr1-3 mdr4-1 17557805 mutant
abcb19 19508431 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G28860.1 
length: 4228 
miRNA : ath-miR417
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.057461 
 
position  3392 
target 5' A        U     G   C  U 
           UCGAGCGG UUUAC ACC UC  
           AGCUUGUU AAGUG UGG AG  
miRNA  3'          U     A   A    
 
 
target: AT3G28860.1 
length: 4228 
miRNA : ath-miR777
length: 22 
 
mfe: -26.8 kcal/mol 
p-value: 0.034279 
 
position  948 
target 5' A         C            U 
           GAGUAA GG ACUUAAUGCGUA  
           UUCGUU CU UGAGUUACGCAU  
miRNA  3'        G  U              
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10058
AccessionTaxon
NP_171753Arabidopsis thaliana
NP_171754Arabidopsis thaliana
NP_172538Arabidopsis thaliana
NP_174115Arabidopsis thaliana
NP_174122Arabidopsis thaliana
NP_181228Arabidopsis thaliana
NP_181480Arabidopsis thaliana
NP_182223Arabidopsis thaliana
NP_189475Arabidopsis thaliana
NP_189477Arabidopsis thaliana
NP_189479Arabidopsis thaliana
NP_189480Arabidopsis thaliana
NP_189528 ( AT3G28860 )Arabidopsis thaliana
NP_191774Arabidopsis thaliana
NP_192091Arabidopsis thaliana
NP_192092Arabidopsis thaliana
NP_193539Arabidopsis thaliana
NP_194326Arabidopsis thaliana
NP_199466Arabidopsis thaliana
NP_683599Arabidopsis thaliana
138602Chlamydomonas reinhardtii
138672Chlamydomonas reinhardtii
NP_001043254Oryza sativa Japonica Group
NP_001043962Oryza sativa Japonica Group
NP_001044110Oryza sativa Japonica Group
NP_001046144Oryza sativa Japonica Group
NP_001046147Oryza sativa Japonica Group
NP_001046148Oryza sativa Japonica Group
NP_001047803Oryza sativa Japonica Group
NP_001052982Oryza sativa Japonica Group
NP_001053113Oryza sativa Japonica Group
NP_001054045Oryza sativa Japonica Group
NP_001056226Oryza sativa Japonica Group
NP_001062529Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_01.00010580Ostreococcus tauri
e_gw1.1.462.1Physcomitrella patens subsp. patens
e_gw1.173.88.1Physcomitrella patens subsp. patens
e_gw1.29.17.1Physcomitrella patens subsp. patens
e_gw1.38.19.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_3910045Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2520035Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3380009Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3970003Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_188000008Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_28000043Physcomitrella patens subsp. patens
28166.m001066Ricinus communis
29581.m000253Ricinus communis
29693.m002084Ricinus communis
29693.m002086Ricinus communis
29727.m000475Ricinus communis
29822.m003425Ricinus communis
29822.m003496Ricinus communis
29889.m003408Ricinus communis
29889.m003409Ricinus communis
29912.m005427Ricinus communis
29929.m004786Ricinus communis
30054.m000810Ricinus communis
30076.m004556Ricinus communis
30076.m004557Ricinus communis
30076.m004558Ricinus communis
30076.m004559Ricinus communis
30078.m002286Ricinus communis
30098.m001722Ricinus communis
30170.m014384Ricinus communis
28531.m000016Ricinus communis
NP_191092Arabidopsis thaliana
NP_001045564Oryza sativa Japonica Group
NP_001049736Oryza sativa Japonica Group
29822.m003426Ricinus communis
NP_001042790Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF901233.3E-5813522IPR011527ABC transporter, transmembrane domain, type 1
PfamPF006646.499999999999916E-4342317IPR001140ABC transporter, transmembrane domain
PROSITEPS509290.042330IPR017940ABC transporter integral membrane type 1
PROSITEPS508930.0365601IPR003439ABC transporter-like
SMARTSM003826.599998525263755E-17392578IPR003593ATPase, AAA+ type, core
PfamPF000051.6999999999999923E-20407532IPR003439ABC transporter-like
PROSITEPS002110.0504518IPR017871ABC transporter, conserved site
SuperFamilySSF901231.5E-546591161IPR011527ABC transporter, transmembrane domain, type 1
PfamPF006643.6000000000000224E-45688962IPR001140ABC transporter, transmembrane domain
PROSITEPS509290.0688975IPR017940ABC transporter integral membrane type 1
PROSITEPS508930.010101246IPR003439ABC transporter-like
SMARTSM003822.39999798157265E-1210371223IPR003593ATPase, AAA+ type, core
PfamPF000054.400000000000005E-1910521177IPR003439ABC transporter-like
PROSITEPS002110.011491163IPR017871ABC transporter, conserved site