You are querying gene by "AT3G24520".

Locus: AT3G24520 Alias: AT-HSFC1

Hormone Evidence Function category Gene Description PMID
abscisic acidTransgenic Hormone signal transduction One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. 19783066
Mutant Hormone signal transduction One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. 19783066

Basic gene information ( show / hide contents )

Locus AT3G24520 | Chromosome: 3 | Strand: +
Description One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.
Alias
AT-HSFC1( alias )
HSFC1( alias )
Gene model
AT3G24520.1 | From: 8941073 | To: 8942881
Sequence
AT3G24520.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
abc- 19783066 mutant
abc-C 19783066 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G24520.1 
length: 1725 
miRNA : ath-miR780.2
length: 21 
 
mfe: -26.1 kcal/mol 
p-value: 0.007711 
 
position  1261 
target 5' G    G   G      G      A 
           AUGU GGA UAUUCA GGAGAA  
           UACG UCU AUAAGU CUUCUU  
miRNA  3'      G          G        
 
 
target: AT3G24520.1 
length: 1725 
miRNA : ath-miR841
length: 21 
 
mfe: -25.8 kcal/mol 
p-value: 0.011275 
 
position  1360 
target 5' C  U     G         U  G 
           UC GUUUC AGGUGGCUU UA  
           AG CAAAG UUCACCGAG AU  
miRNA  3' A  U               C    
 
 
target: AT3G24520.1 
length: 1725 
miRNA : ath-miR847
length: 21 
 
mfe: -24.3 kcal/mol 
p-value: 0.044352 
 
position  994 
target 5' A             A A     A 
           GUC AGAGGAAGA G AGUGG  
           UAG UCUUCUUCU C UCACU  
miRNA  3' G   U         C         
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51539
AccessionTaxon
NP_189095 ( AT3G24520 )Arabidopsis thaliana
NP_001043623Oryza sativa Japonica Group
NP_001046370Oryza sativa Japonica Group
NP_001057843Oryza sativa Japonica Group
29912.m005526Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.101.600002406959863E-3512107IPR011991Winged helix-turn-helix transcription repressor DNA-binding
SMARTSM004157.300005909152047E-5514107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1999990098070814E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.599999999999995E-3018110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1999990098070814E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITEPS004340.05781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1999990098070814E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF073340.063122189IPR009938Interferon induced 35kDa, N-terminal