You are querying gene by "AT3G23140".

Locus: AT3G23140 Alias: URO

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone metabolism zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G43540.1); Has 334 Blast hits to 332 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 20466845

Basic gene information ( show / hide contents )

Locus AT3G23140 | Chromosome: 3 | Strand: +
Description zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G43540.1); Has 334 Blast hits to 332 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Alias
URO( alias )
Gene model
AT3G23140.1 | From: 8250586 | To: 8251104
Sequence
AT3G23140.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
zinc ion binding PMID:
transcription factor activity PMID: 11118137
nucleic acid binding PMID:
cellular_component
intracellular PMID:
biological_process
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
uro 20466845 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G23140.1 
length: 519 
miRNA : ath-miR418
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.001176 
 
position  498 
target 5' C                U     A 
           GG CGG UCAUCGUCA CAUUA  
           CC GUC AGUAGUAGU GUAAU  
miRNA  3'    A   A                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003550.93999999897327052143IPR015880Zinc finger, C2H2-like
PROSITEPS501570.02148IPR007087Zinc finger, C2H2-type
PROSITEPS000280.02343IPR007087Zinc finger, C2H2-type