You are querying gene by "AT3G20780".

Locus: AT3G20780 Alias: ATTOP6B

Hormone Evidence Function category Gene Description PMID
brassinosteroidGeneOntology - response to brassinosteroid stimulus 12119417

Basic gene information ( show / hide contents )

Locus AT3G20780 | Chromosome: 3 | Strand: -
Description response to brassinosteroid stimulus
Alias
ATTOP6B( alias )
BIN3( alias )
HYP6( alias )
RHL3( alias )
Gene model
AT3G20780.1 | From: 7263906 | To: 7268578
Sequence
AT3G20780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 16339310
identical protein binding PMID: 16339310
DNA topoisomerase (ATP-hydrolyzing) activity PMID: 11410368
cellular_component
DNA topoisomerase complex (ATP-hydrolyzing) PMID: 11410368
biological_process
pattern specification process PMID: 9165126
response to brassinosteroid stimulus PMID: 12119417
trichome differentiation PMID: 9165126
DNA endoreduplication PMID: 0012401176
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G20780.1 
length: 2212 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -19.3 kcal/mol 
p-value: 0.077379 
 
position  1402 
target 5' C   U  U        U      G 
           UGG GU AGUUUGGG GGAAGA  
           ACC UA UUAAACUC CUUUUU  
miRNA  3' A      U                 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G20780AT1G18400PositiveotherN/AGO/others12119417
AT3G20780AT1G73830PositiveotherN/AGO/others12119417
AT3G20780AT4G36540PositiveotherN/AGO/others12119417

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_18068
AccessionTaxon
NP_188714 ( AT3G20780 )Arabidopsis thaliana
116827Chlamydomonas reinhardtii
NP_001062761Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_05.0001000214Ostreococcus tauri
e_gw1.244.52.1Physcomitrella patens subsp. patens
30169.m006390Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.565.104.3000017064587873E-6918309IPR003594ATPase-like, ATP-binding domain
SuperFamilySSF558741.8E-2328370IPR003594ATPase-like, ATP-binding domain
SMARTSM003870.1200000021724724545234IPR003594ATPase-like, ATP-binding domain
PfamPF025182.4999999999999994E-649215IPR003594ATPase-like, ATP-binding domain
SuperFamilySSF542111.4E-53396560IPR020568Ribosomal protein S5 domain 2-type fold
ProDomPD0137900.0398569IPR015320DNA topoisomerase VI, subunit B, transducer
PfamPF092392.899999999999986E-49398557IPR015320DNA topoisomerase VI, subunit B, transducer
Gene3DG3DSA:3.30.230.107.300005909151711E-46404557IPR014721Ribosomal protein S5 domain 2-type fold, subgroup