You are querying gene by "AT3G19820".

Locus: AT3G19820 Alias: CBB1

Hormone Evidence Function category Gene Description PMID
brassinosteroidMutant Hormone biosynthesis delta 5-sterol-delta 24-reductase (isomerase); dwarf mutant 9761794
GeneOntology - brassinosteroid biosynthetic process 9761794

Basic gene information ( show / hide contents )

Locus AT3G19820 | Chromosome: 3 | Strand: -
Description delta 5-sterol-delta 24-reductase (isomerase); dwarf mutant
Alias
CBB1( alias )
DIM( alias )
DIM1( alias )
DWF1( alias )
EVE1( alias )
Gene model
AT3G19820.1 | From: 6879623 | To: 6881658
AT3G19820.2 | From: 6879624 | To: 6882321
Sequence
AT3G19820.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G19820.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
catalytic activity PMID: 9761794
calmodulin binding PMID: 16193053
cellular_component
integral to membrane PMID: 9761794
biological_process
steroid biosynthetic process PMID: 9761794
unidimensional cell growth PMID:
brassinosteroid biosynthetic process PMID: 10069828
response to light stimulus PMID: 7828854
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   brassinosteroid   ]

Genotype PMID Type
dwf1-1 9761794 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G19820.1 
length: 1940 
miRNA : ath-miR397a
length: 21 
 
mfe: -26.8 kcal/mol 
p-value: 0.017119 
 
position  1239 
target 5' G       A       G     G 
           GUUGGCG UGCACUC AAUGG  
           UAGUUGC ACGUGAG UUACU  
miRNA  3' G       G               
 
 
target: AT3G19820.1 
length: 1940 
miRNA : ath-miR397b
length: 21 
 
mfe: -31.4 kcal/mol 
p-value: 0.000902 
 
position  1239 
target 5' G               G     G 
           GUUGGCGAUGCACUC AAUGG  
           UAGUUGCUACGUGAG UUACU  
miRNA  3' G                       
 
 
target: AT3G19820.2 
length: 2019 
miRNA : ath-miR397a
length: 21 
 
mfe: -26.8 kcal/mol 
p-value: 0.017971 
 
position  1319 
target 5' G       A       G     G 
           GUUGGCG UGCACUC AAUGG  
           UAGUUGC ACGUGAG UUACU  
miRNA  3' G       G               
 
 
target: AT3G19820.2 
length: 2019 
miRNA : ath-miR397b
length: 21 
 
mfe: -31.4 kcal/mol 
p-value: 0.000955 
 
position  1319 
target 5' G               G     G 
           GUUGGCGAUGCACUC AAUGG  
           UAGUUGCUACGUGAG UUACU  
miRNA  3' G                       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14779
AccessionTaxon
NP_188616Arabidopsis thaliana
NP_850616 ( AT3G19820 )Arabidopsis thaliana
NP_001064534Oryza sativa Japonica Group
estExt_fgenesh2_pg.C_1300054Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_138000013Physcomitrella patens subsp. patens
29958.m000939Ricinus communis
30100.m000783Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5138711.96449232IPR016166FAD-binding, type 2
PfamPF015659.9e-16110199IPR006094FAD linked oxidase, N-terminal
SuperFamilySSF561767.2e-28110232IPR016166FAD-binding, type 2
Gene3DG3DSA:3.30.465.205.1e-06117231IPR016168FAD-linked oxidase, FAD-binding, subdomain 2