You are querying gene by "AT3G18780".

Locus: AT3G18780 Alias: ACT2

Hormone Evidence Function category Gene Description PMID
cytokininGeneOntology - response to cytokinin stimulus 16212609

Basic gene information ( show / hide contents )

Locus AT3G18780 | Chromosome: 3 | Strand: +
Description response to cytokinin stimulus
Alias
ACT2( alias )
DER1( alias )
ENL2( alias )
LSR2( alias )
Gene model
AT3G18780.1 | From: 6474877 | To: 6477210
AT3G18780.2 | From: 6474848 | To: 6477210
Sequence
AT3G18780.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G18780.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
structural constituent of cytoskeleton PMID: 11809837
cellular_component
cytoplasm PMID: 11809837
biological_process
response to high light intensity PMID: 11683875
response to far red light PMID: 17076805
response to cytokinin stimulus PMID: 16212609
root hair elongation PMID: 12481103
response to red light PMID: 17076805
root epidermal cell differentiation PMID: 15863435
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G18780.1 
length: 1813 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.9 kcal/mol 
p-value: 0.025556 
 
position  1078 
target 5' A                C   A 
           GUGU GAUGUGGAUAU AGG  
           CGCG UUACGCCUAUA UUC  
miRNA  3' A    U           U     
 
 
target: AT3G18780.2 
length: 1756 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.9 kcal/mol 
p-value: 0.024699 
 
position  1107 
target 5' A                C   A 
           GUGU GAUGUGGAUAU AGG  
           CGCG UUACGCCUAUA UUC  
miRNA  3' A    U           U     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10066
AccessionTaxon
NP_001031504Arabidopsis thaliana
NP_001078769Arabidopsis thaliana
NP_175350Arabidopsis thaliana
NP_181740Arabidopsis thaliana
NP_187818Arabidopsis thaliana
NP_188508Arabidopsis thaliana
NP_190236Arabidopsis thaliana
NP_196543Arabidopsis thaliana
NP_200745Arabidopsis thaliana
NP_566988Arabidopsis thaliana
NP_850284Arabidopsis thaliana
NP_850611 ( AT3G18780 )Arabidopsis thaliana
24392Chlamydomonas reinhardtii
NP_001051086Oryza sativa Japonica Group
NP_001051822Oryza sativa Japonica Group
NP_001054419Oryza sativa Japonica Group
NP_001055661Oryza sativa Japonica Group
NP_001065034Oryza sativa Japonica Group
NP_001065830Oryza sativa Japonica Group
NP_001066233Oryza sativa Japonica Group
NP_001067399Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_16.00010026Ostreococcus tauri
estExt_Genewise1.C_1980108Physcomitrella patens subsp. patens
estExt_Genewise1.C_3370024Physcomitrella patens subsp. patens
estExt_Genewise1.C_3720037Physcomitrella patens subsp. patens
estExt_Genewise1.C_3810017Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_3720027Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_1980015Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3810004Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3370021Physcomitrella patens subsp. patens
29613.m000365Ricinus communis
29836.m000559Ricinus communis
30206.m000761Ricinus communis
30003.m000327Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF000222.2e-1445359IPR004000Actin/actin-like
PfamPF000228.5e-1575377IPR004000Actin/actin-like
SMARTSM002682.4e-2107368IPR004000Actin/actin-like
SMARTSM002685.5e-2317377IPR004000Actin/actin-like
PRINTSPR001906.4e-562837IPR004000Actin/actin-like
PRINTSPR001907.2e-562837IPR004000Actin/actin-like
PANTHERPTHR119374.5e-26731356IPR004000Actin/actin-like
PANTHERPTHR119375.7e-28831377IPR004000Actin/actin-like
PRINTSPR001906.4e-565162IPR004000Actin/actin-like
PRINTSPR001907.2e-565162IPR004000Actin/actin-like
PROSITEPS00406NA5565IPR004001Actin, conserved site
PROSITEPS00406NA5565IPR004001Actin, conserved site
PRINTSPR001906.4e-566385IPR004000Actin/actin-like
PRINTSPR001907.2e-566385IPR004000Actin/actin-like
PROSITEPS01132NA106118IPR020902Actin/actin-like conserved site
PROSITEPS01132NA106118IPR020902Actin/actin-like conserved site
PRINTSPR001906.4e-56117130IPR004000Actin/actin-like
PRINTSPR001907.2e-56117130IPR004000Actin/actin-like
PRINTSPR001906.4e-56142161IPR004000Actin/actin-like
PRINTSPR001907.2e-56142161IPR004000Actin/actin-like
PRINTSPR001906.4e-56238254IPR004000Actin/actin-like
PRINTSPR001907.2e-56238254IPR004000Actin/actin-like
PROSITEPS00432NA358366IPR004001Actin, conserved site