You are querying gene by "AT3G16470".

Locus: AT3G16470 Alias: JR1

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus

Basic gene information ( show / hide contents )

Locus AT3G16470 | Chromosome: 3 | Strand: -
Description response to jasmonic acid stimulus
Alias
JR1( alias )
Gene model
AT3G16470.1 | From: 5595944 | To: 5598050
AT3G16470.2 | From: 5595902 | To: 5598033
Sequence
AT3G16470.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G16470.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
biological_process
response to wounding PMID: 9648747
response to cold PMID: 14617066
response to jasmonic acid stimulus PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G16470.1 
length: 1579 
miRNA : ath-miR414
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.010511 
 
position  551 
target 5' A      C            U 
           GGUGGU GUGGUGGAGAUG  
           CUGCUA UACUACUUCUAC  
miRNA  3' A      C            U 
 
 
target: AT3G16470.2 
length: 1626 
miRNA : ath-miR414
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.010858 
 
position  556 
target 5' A      C            U 
           GGUGGU GUGGUGGAGAUG  
           CUGCUA UACUACUUCUAC  
miRNA  3' A      C            U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14136
AccessionTaxon
NP_001030710Arabidopsis thaliana
NP_001030711Arabidopsis thaliana
NP_001030712 ( AT3G16470 )Arabidopsis thaliana
NP_001078021Arabidopsis thaliana
NP_001154390Arabidopsis thaliana
NP_001154564Arabidopsis thaliana
NP_175612Arabidopsis thaliana
NP_175615Arabidopsis thaliana
NP_175616Arabidopsis thaliana
NP_175617Arabidopsis thaliana
NP_175618Arabidopsis thaliana
NP_175619Arabidopsis thaliana
NP_175622Arabidopsis thaliana
NP_175623Arabidopsis thaliana
NP_175624Arabidopsis thaliana
NP_175625Arabidopsis thaliana
NP_176070Arabidopsis thaliana
NP_176218Arabidopsis thaliana
NP_176219Arabidopsis thaliana
NP_176220Arabidopsis thaliana
NP_176318Arabidopsis thaliana
NP_180168Arabidopsis thaliana
NP_181463Arabidopsis thaliana
NP_181465Arabidopsis thaliana
NP_188263Arabidopsis thaliana
NP_188264Arabidopsis thaliana
NP_188265Arabidopsis thaliana
NP_188266Arabidopsis thaliana
NP_188267Arabidopsis thaliana
NP_188775Arabidopsis thaliana
NP_198204Arabidopsis thaliana
NP_198443Arabidopsis thaliana
NP_198444Arabidopsis thaliana
NP_198670Arabidopsis thaliana
NP_198671Arabidopsis thaliana
NP_199796Arabidopsis thaliana
NP_199797Arabidopsis thaliana
NP_199798Arabidopsis thaliana
NP_564427Arabidopsis thaliana
NP_566547Arabidopsis thaliana
NP_849794Arabidopsis thaliana
NP_850594Arabidopsis thaliana
NP_850595Arabidopsis thaliana
NP_850596Arabidopsis thaliana
NP_974324Arabidopsis thaliana
NP_176112Arabidopsis thaliana
NP_199412Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF511014.1E-371143IPR001229Mannose-binding lectin
Gene3DG3DSA:2.100.10.309.600041308841924E-332143IPR001229Mannose-binding lectin
PfamPF014191.9000000000000044E-3713142IPR001229Mannose-binding lectin
Gene3DG3DSA:2.100.10.309.800002721303042E-34150297IPR001229Mannose-binding lectin
SuperFamilySSF511017.5E-38150297IPR001229Mannose-binding lectin
PfamPF014192.1000000000000034E-37167296IPR001229Mannose-binding lectin
Gene3DG3DSA:2.100.10.302.3000044072653926E-43300448IPR001229Mannose-binding lectin
SuperFamilySSF511012.0E-45300448IPR001229Mannose-binding lectin
PfamPF014195.100000000000043E-41318448IPR001229Mannose-binding lectin