You are querying gene by "AT3G16350".

Locus: AT3G16350 Alias: AT3G16350

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT3G16350 | Chromosome: 3 | Strand: +
Description response to jasmonic acid stimulus
Alias
AT3G16350( alias )
AT3G16350( alias )
AT3G16350( alias )
AT3G16350( alias )
Gene model
AT3G16350.1 | From: 5547724 | To: 5549666
Sequence
AT3G16350.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to auxin stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G16350.1 
length: 1537 
miRNA : ath-miR414
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.007670 
 
position  210 
target 5' G                 A  G 
           GA GGUGGUGGUGGAGG GG  
           CU CUACUACUACUUCU CU  
miRNA  3' A  G              A    
 
 
target: AT3G16350.1 
length: 1537 
miRNA : ath-miR838
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.028057 
 
position  184 
target 5' C      U G      C      G 
           GUGCGG G AAGUGG GGAGGA  
           CACGUU C UUCAUC UCUUUU  
miRNA  3' A               U        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_27693
AccessionTaxon
NP_188256 ( AT3G16350 )Arabidopsis thaliana
NP_001042254Oryza sativa Japonica Group
30146.m003509Ricinus communis
NP_199550Arabidopsis thaliana
0600010132Ostreococcus tauri
e_gw1.89.66.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1880060Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_70000111Physcomitrella patens subsp. patens
gw1.89.65.1Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_66000046Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_66000048Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003430.5799999921630268420IPR001878Zinc finger, CCHC-type
SuperFamilySSF466896.5E-16130190IPR009057Homeodomain-like
PROSITEPS512940.0131187IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
TIGRFAMTIGR015573.600004339659267E-21134186IPR006447Myb-like DNA-binding domain, SHAQKYF class
SMARTSM007179.5000102816722E-11135185IPR001005SANT, DNA-binding
PfamPF002492.3000000000000007E-8138182IPR014778Myb, DNA-binding