You are querying gene by "AT3G15540".

Locus: AT3G15540 Alias: IAA19

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction 14729917
GeneOntology - response to auxin stimulus 12036262

Basic gene information ( show / hide contents )

Locus AT3G15540 | Chromosome: 3 | Strand: +
Description
Alias
IAA19( alias )
MSG2( alias )
Gene model
AT3G15540.1 | From: 5264031 | To: 5265685
Sequence
AT3G15540.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
response to auxin stimulus PMID: 12036262
gravitropism PMID:
phototropism PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
msg2-1 14729917 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G15540.1 
length: 970 
miRNA : ath-miR414
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.004417 
 
position  145 
target 5' A     A           A  G 
           GA GA GAUGAUGAAGA GA  
           CU CU CUACUACUUCU CU  
miRNA  3' A  G  A           A    
 
 
target: AT3G15540.1 
length: 970 
miRNA : ath-miR828
length: 22 
 
mfe: -24.4 kcal/mol 
p-value: 0.001908 
 
position  387 
target 5' A   U   C          G    U 
           UGG GUG CUUAUUUGAG AAGA  
           ACC UAU GAGUAAAUUC UUCU  
miRNA  3'     U              G      
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G15540AT1G19220negativeotherN/Amutance17900969
AT3G15540AT1G19850negativeotherN/Amutance17900969
AT3G15540AT1G30330negativeotherN/Amutance17900969
AT3G15540AT1G59750negativeotherN/Amutance17900969
AT3G15540AT1G77850negativeotherN/Amutance17900969
AT3G15540AT2G24765negativeotherN/Amutance17900969
AT3G15540AT2G28350negativeotherN/Amutance17900969
AT3G15540AT4G30080negativeotherN/Amutance17900969
AT3G15540AT5G20730negativeotherN/Amutance17900969
AT3G15540AT5G37020negativeotherN/Amutance17900969
AT3G15540AT5G60450negativeotherN/Amutance17900969
AT3G15540AT5G62000negativeotherN/Amutance17900969

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_91131
AccessionTaxon
NP_188173 ( AT3G15540 )Arabidopsis thaliana
29841.m002748Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023091.2e-606190IPR003311AUX/IAA protein
PROSITEPS5096229.76397183IPR011525Aux/IAA-ARF-dimerisation