You are querying gene by "AT3G13224".

Locus: AT3G13224 Alias: AT3G13224

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT3G13224 | Chromosome: 3 | Strand: +
Description RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G40490.1); Has 22854 Blast hits to 13865 proteins in 592 species: Archae - 2; Bacteria - 1218; Metazoa - 13742; Fungi - 1984; Plants - 3831; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
Alias
AT3G13224( alias )
Gene model
AT3G13224.1 | From: 4254767 | To: 4257416
AT3G13224.2 | From: 4254750 | To: 4257414
Sequence
AT3G13224.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G13224.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
RNA binding PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G13224.1 
length: 2179 
miRNA : ath-miR857
length: 21 
 
mfe: -21.9 kcal/mol 
p-value: 0.093990 
 
position  431 
target 5' G       C      G U      G 
           GUAUACC UCAACG U ACAGAA  
           UAUGUGG AGUUGU A UGUUUU  
miRNA  3'         A                 
 
 
target: AT3G13224.1 
length: 2179 
miRNA : ath-miR861-3p
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.013824 
 
position  657 
target 5' G    A   U            U 
           GUUC UGA GACAUAUUUAUC  
           CAGG ACU CUGUAUAGGUAG  
miRNA  3'      A   U              
 
 
target: AT3G13224.2 
length: 1968 
miRNA : ath-miR857
length: 21 
 
mfe: -21.9 kcal/mol 
p-value: 0.082868 
 
position  448 
target 5' G       C      G U      G 
           GUAUACC UCAACG U ACAGAA  
           UAUGUGG AGUUGU A UGUUUU  
miRNA  3'         A                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_92035
AccessionTaxon
NP_851001 ( AT3G13224 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3306.699996876259571E-201797IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3306.699996876259571E-201797IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.01995IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.01995IPR000504RNA recognition motif, RNP-1
SMARTSM003605.59999989417023E-212091IPR000504RNA recognition motif, RNP-1
SMARTSM003605.59999989417023E-212091IPR000504RNA recognition motif, RNP-1
PfamPF000761.3999999999999998E-132188IPR000504RNA recognition motif, RNP-1
PfamPF000763.1000000000000024E-132188IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3301.2999992446818318E-1899182IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3301.1000015067164283E-24107225IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0109185IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.0109187IPR000504RNA recognition motif, RNP-1
SMARTSM003607.999991458767534E-19110183IPR000504RNA recognition motif, RNP-1
SMARTSM003604.600000443308617E-20110183IPR000504RNA recognition motif, RNP-1
PfamPF000761.3000000000000006E-15111169IPR000504RNA recognition motif, RNP-1
PfamPF000762.4E-15111169IPR000504RNA recognition motif, RNP-1