You are querying gene by "AT3G12490".

Locus: AT3G12490 Alias: CYS6

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress). 19690865
GibberellinMutant Hormone signal transduction Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress). 19690865

Basic gene information ( show / hide contents )

Locus AT3G12490 | Chromosome: 3 | Strand: -
Description Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).
Alias
CYS6( alias )
CYS6( alias )
Gene model
AT3G12490.2 | From: 3960408 | To: 3961922
AT3G12490.1 | From: 3960408 | To: 3961918
Sequence
AT3G12490.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G12490.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
cysteine protease inhibitor activity PMID:
cellular_component
endomembrane system PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  abscisic acid     gibberellin  

[   abscisic acid   ]

Genotype PMID Type
cys6-2 19690865 mutant

[   gibberellin   ]

Genotype PMID Type
cys6-2 19690865 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G12490.2 
length: 866 
miRNA : ath-miR854a
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.003816 
 
position  72 
target 5' U             C    U  A 
           UUCUUCUCUCUAU CCUC UC  
           AGGAGGAGGGAUA GGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G12490.2 
length: 866 
miRNA : ath-miR854b
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.002577 
 
position  72 
target 5' U             C    U  A 
           UUCUUCUCUCUAU CCUC UC  
           AGGAGGAGGGAUA GGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G12490.2 
length: 866 
miRNA : ath-miR854c
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.003330 
 
position  72 
target 5' U             C    U  A 
           UUCUUCUCUCUAU CCUC UC  
           AGGAGGAGGGAUA GGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G12490.2 
length: 866 
miRNA : ath-miR854d
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.002703 
 
position  72 
target 5' U             C    U  A 
           UUCUUCUCUCUAU CCUC UC  
           AGGAGGAGGGAUA GGAG AG  
miRNA  3' G                  U    
 
 
target: AT3G12490.2 
length: 866 
miRNA : ath-miR854e
length: 21 
 
mfe: -30.7 kcal/mol 
p-value: 0.003511 
 
position  72 
target 5' U             C    U  A 
           UUCUUCUCUCUAU CCUC UC  
           AGGAGGAGGGAUA GGAG AG  
miRNA  3' G                  U    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37498
AccessionTaxon
NP_566425 ( AT3G12490 )Arabidopsis thaliana
NP_850570Arabidopsis thaliana
NP_001042702Oryza sativa Japonica Group
e_gw1.212.78.1Physcomitrella patens subsp. patens
e_gw1.66.151.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2380025Physcomitrella patens subsp. patens
29686.m000868Ricinus communis
estExt_fgenesh1_kg.C_2380002Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM000435.299996575501887E-32292IPR000010Proteinase inhibitor I25, cystatin
PfamPF000312.6E-131091IPR000010Proteinase inhibitor I25, cystatin
ProDomPD0012310.01895IPR020381Proteinase inhibitor I25, cystatin, conserved region
SMARTSM000437.1e-3235125IPR000010Proteinase inhibitor I25, cystatin
PfamPF000314.5e-1643124IPR000010Proteinase inhibitor I25, cystatin
PROSITEPS002870.04861IPR018073Proteinase inhibitor I25, cystatin, conserved site
PROSITEPS00287NA8194IPR018073Proteinase inhibitor I25, cystatin, conserved site
PfamPF000311.1999999999999996E-4113187IPR000010Proteinase inhibitor I25, cystatin
PfamPF000312.2e-07146218IPR000010Proteinase inhibitor I25, cystatin