You are querying gene by "AT3G11820".

Locus: AT3G11820 Alias: AT-SYR1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - salicylic acid mediated signaling pathway 17241452
jasmonic acidGeneOntology - jasmonic acid mediated signaling pathway 17241452

Basic gene information ( show / hide contents )

Locus AT3G11820 | Chromosome: 3 | Strand: -
Description salicylic acid mediated signaling pathway
Alias
AT-SYR1( alias )
ATSYP121( alias )
ATSYR1( alias )
PEN1( alias )
SYP121( alias )
SYR1( alias )
Gene model
AT3G11820.2 | From: 3729311 | To: 3731155
AT3G11820.1 | From: 3729311 | To: 3731122
Sequence
AT3G11820.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G11820.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
SNAP receptor activity PMID: 11115874
cellular_component
SNARE complex PMID: 14586469
plasma membrane PMID: 11591731
biological_process
defense response to fungus PMID: 15342780
protein targeting to membrane PMID: 17662029
response to fungus PMID: 15342780
negative regulation of programmed cell death PMID: 17241452
membrane fusion PMID: 11115874
regulation of plant-type hypersensitive response PMID: 17241452
negative regulation of cellular defense response PMID: 17241452
intracellular protein transport PMID: 11115874
salicylic acid mediated signaling pathway PMID: 17241452
jasmonic acid mediated signaling pathway PMID: 17241452
defense response PMID: 16255250
negative regulation of defense response PMID: 16732289
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
SNARE interactions in vesicular transport syntaxin 2/3/4
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169h
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.009463 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169i
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.010184 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169j
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.011569 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169k
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.014542 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169l
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.013123 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169m
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.011810 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.1 
length: 1524 
miRNA : ath-miR169n
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.012835 
 
position  1265 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169h
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.008891 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169i
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.009455 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169j
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.010854 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169k
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.013915 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169l
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.012363 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169m
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.011112 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 
target: AT3G11820.2 
length: 1440 
miRNA : ath-miR169n
length: 21 
 
mfe: -27.2 kcal/mol 
p-value: 0.012300 
 
position  1181 
target 5' U        G     A   C    A 
           CAGGCAAG CGUCU UUG GUUG  
           GUCCGUUC GUAGG AAC CGAU  
miRNA  3'          A                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_50043
AccessionTaxon
NP_187788 ( AT3G11820 )Arabidopsis thaliana
NP_974288Arabidopsis thaliana
NP_001051494Oryza sativa Japonica Group
29333.m001054Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM005032.1000026783402984E-468134IPR006011Syntaxin, N-terminal
SuperFamilySSF476615.3E-5010218IPR010989t-SNARE
PfamPF008046.800000000000011E-1013119IPR006011Syntaxin, N-terminal
SMARTSM005032.9e-4639165IPR006011Syntaxin, N-terminal
SuperFamilySSF476615.3e-5041249IPR010989t-SNARE
PfamPF008041e-1244150IPR006011Syntaxin, N-terminal
SMARTSM003976.19998763505952E-20178245IPR000727Target SNARE coiled-coil domain
PROSITEPS501920.0183245IPR000727Target SNARE coiled-coil domain
PfamPF057393.300000000000004E-19188250IPR000727Target SNARE coiled-coil domain
PROSITEPS009140.0189228IPR006012Syntaxin/epimorphin, conserved site
SMARTSM003971e-19209276IPR000727Target SNARE coiled-coil domain
PROSITEPS5019217.541214276IPR000727Target SNARE coiled-coil domain
PfamPF057394.8e-22219281IPR000727Target SNARE coiled-coil domain
PROSITEPS00914NA220259IPR006012Syntaxin/epimorphin, conserved site