You are querying gene by "AT3G11440".

Locus: AT3G11440 Alias: ATMYB65

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
ethyleneGeneOntology - response to ethylene stimulus 16463103
gibberellinGeneOntology - gibberellic acid mediated signaling 11743113

Basic gene information ( show / hide contents )

Locus AT3G11440 | Chromosome: 3 | Strand: +
Description gibberellic acid mediated signaling
Alias
ATMYB65( alias )
MYB65( alias )
Gene model
AT3G11440.1 | From: 3602099 | To: 3605110
Sequence
AT3G11440.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11743113
cellular_component
nucleus PMID: 11743113
biological_process
response to salicylic acid stimulus PMID: 16463103
pollen sperm cell differentiation PMID: 15722475
regulation of transcription PMID: 11118137
response to ethylene stimulus PMID: 16463103
gibberellic acid mediated signaling PMID: 11743113
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR159a
length: 21 
 
mfe: -37.7 kcal/mol 
p-value: 0.000259 
 
position  1154 
target 5' C              U     U 
           UGGAGCUCCCUUCA UCCAA  
           AUCUCGAGGGAAGU AGGUU  
miRNA  3'                U     U 
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR159b
length: 21 
 
mfe: -36.9 kcal/mol 
p-value: 0.000346 
 
position  1155 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           UCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR159c
length: 21 
 
mfe: -39.0 kcal/mol 
p-value: 0.000205 
 
position  1155 
target 5' U             U     U 
           GGAGCUCCCUUCA UCCAA  
           CCUCGAGGGAAGU AGGUU  
miRNA  3' U             U     U 
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR779.1
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.034111 
 
position  936 
target 5' U   C           A A   U   U 
           GUG AGCAGUAACAU A GCA GAA  
           UAC UCGUCGUUGUA U CGU CUU  
miRNA  3'                             
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR854a
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.022190 
 
position  34 
target 5' U      A         C    G 
           UUCUCC UCCUUGUCU UGUC  
           AGGAGG AGGGAUAGG GUAG  
miRNA  3' G                A      
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR854b
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.020855 
 
position  34 
target 5' U      A         C    G 
           UUCUCC UCCUUGUCU UGUC  
           AGGAGG AGGGAUAGG GUAG  
miRNA  3' G                A      
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR854c
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.022312 
 
position  34 
target 5' U      A         C    G 
           UUCUCC UCCUUGUCU UGUC  
           AGGAGG AGGGAUAGG GUAG  
miRNA  3' G                A      
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR854d
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.021151 
 
position  34 
target 5' U      A         C    G 
           UUCUCC UCCUUGUCU UGUC  
           AGGAGG AGGGAUAGG GUAG  
miRNA  3' G                A      
 
 
target: AT3G11440.1 
length: 2015 
miRNA : ath-miR854e
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.023078 
 
position  34 
target 5' U      A         C    G 
           UUCUCC UCCUUGUCU UGUC  
           AGGAGG AGGGAUAGG GUAG  
miRNA  3' G                A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37231
AccessionTaxon
NP_001078537Arabidopsis thaliana
NP_187751 ( AT3G11440 )Arabidopsis thaliana
NP_196228Arabidopsis thaliana
NP_850779Arabidopsis thaliana
NP_001044592Oryza sativa Japonica Group
gw1.238.44.1Physcomitrella patens subsp. patens
gw1.66.160.1Physcomitrella patens subsp. patens
29686.m000890Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0016930.01553IPR016310Transcription factor, GAMYB
PROSITEPS512940.03890IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.601.0999990912079224E-154193IPR012287Homeodomain-related
PANTHERPTHR106412.000013927720362E-9341306IPR015495Myb transcription factor
SMARTSM007177.800000169384131E-124292IPR001005SANT, DNA-binding
PfamPF002492.1000000000000036E-104390IPR014778Myb, DNA-binding
SuperFamilySSF466891.1E-2143113IPR009057Homeodomain-like
PROSITEPS512940.091145IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007174.199997713395805E-1795143IPR001005SANT, DNA-binding
PfamPF002496.1E-1196139IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.601.3999989204988965E-1697145IPR012287Homeodomain-related
SuperFamilySSF466896.0E-9102148IPR009057Homeodomain-like