You are querying gene by "AT3G11240".

Locus: AT3G11240 Alias: no alias

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. 19255443

Basic gene information ( show / hide contents )

Locus AT3G11240 | Chromosome: 3 | Strand: -
Description Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
AliasNo alias.
Gene model
AT3G11240.1 | From: 3518490 | To: 3521121
Sequence
AT3G11240.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
arginyltransferase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
protein arginylation PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Protein folding and associated processing arginine-tRNA-protein transferase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
ate1-2 ate2-1 19255443 mutant
ate2-1 19255443 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G11240.1 
length: 2022 
miRNA : ath-miR396a
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.010453 
 
position  1780 
target 5' U     A           U    G 
           UAGUU CAGGAAAGUUG UGGG  
           GUCAA GUUCUUUCGAC ACCU  
miRNA  3'                        U 
 
 
target: AT3G11240.1 
length: 2022 
miRNA : ath-miR396b
length: 21 
 
mfe: -26.7 kcal/mol 
p-value: 0.012541 
 
position  1781 
target 5' U    A           U    G 
           AGUU CAGGAAAGUUG UGGG  
           UCAA GUUCUUUCGAC ACCU  
miRNA  3' U                     U 
 
 
target: AT3G11240.1 
length: 2022 
miRNA : ath-miR414
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.001872 
 
position  1600 
target 5' A                    U 
           UGAUGAUGAUGAUGAA AUG  
           ACUGCUACUACUACUU UAC  
miRNA  3'                  C   U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12605
AccessionTaxon
NP_187733 ( AT3G11240 )Arabidopsis thaliana
NP_196189Arabidopsis thaliana
NP_001055690Oryza sativa Japonica Group
gw1.02.00.330.1Ostreococcus tauri
estExt_gwp_gw1.C_3330055Physcomitrella patens subsp. patens
29669.m000840Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0372070.01605IPR017137Arginine-tRNA-protein transferase 1, eukaryotic
PfamPF043766.5000000000000066E-2431112IPR007471Arginine-tRNA-protein transferase, N-terminal
PfamPF043777.100000000000077E-46322468IPR007472Arginine-tRNA-protein transferase, C-terminal