You are querying gene by "AT3G11170".

Locus: AT3G11170 Alias: FAD7

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid. 8226956

Basic gene information ( show / hide contents )

Locus AT3G11170 | Chromosome: 3 | Strand: +
Description Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Alias
FAD7( alias )
FADD( alias )
Gene model
AT3G11170.1 | From: 3499807 | To: 3502458
Sequence
AT3G11170.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
omega-3 fatty acid desaturase activity PMID: 8226956
cellular_component
chloroplast PMID: 8754681
plastid membrane PMID: 9368411
biological_process
response to cold PMID: 12232227
fatty acid biosynthetic process PMID: 8226956
KEGG pathway This gene participates in 4 pathways:
Pathway Enzyme
Androgen and estrogen metabolism fatty acid desaturase
1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation fatty acid desaturase
Benzoate degradation via hydroxylation fatty acid desaturase
Two-component system fatty acid desaturase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fad7 8226956 mutant
fad3-2 fad7-2 fad8 12239389 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G11170.1 
length: 1825 
miRNA : ath-miR406
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.010142 
 
position  1001 
target 5' U    C         U C    C 
           UGGA UGCAAUGGC G UCUG  
           ACCU AUGUUAUCG U AGAU  
miRNA  3' G    A           A      
 
 
target: AT3G11170.1 
length: 1825 
miRNA : ath-miR781
length: 21 
 
mfe: -22.8 kcal/mol 
p-value: 0.082715 
 
position  1334 
target 5' G       A             U 
           AAGUAUU CAGGGAGC CUGA  
           UUCAUAG GUCUUUUG GAUU  
miRNA  3' A                A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_34061
AccessionTaxon
NP_187727 ( AT3G11170 )Arabidopsis thaliana
NP_196177Arabidopsis thaliana
56237Chlamydomonas reinhardtii
NP_001060733Oryza sativa Japonica Group
e_gw1.98.104.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_690155Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_650009Physcomitrella patens subsp. patens
28176.m000273Ricinus communis
29814.m000719Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF119602.5999999999999822E-511133IPR021863Protein of unknown function DUF3474
PfamPF004871.4999999999999957E-31140395IPR005804Fatty acid desaturase, type 1