You are querying gene by "AT3G09230".

Locus: AT3G09230 Alias: AtMYB1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT3G09230 | Chromosome: 3 | Strand: +
Description response to salicylic acid stimulus
Alias
AtMYB1( alias )
Gene model
AT3G09230.1 | From: 2833404 | To: 2835344
Sequence
AT3G09230.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 1623193
transcription factor activity PMID: 11118137
biological_process
response to salicylic acid stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID: 9839469
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G09230.1 
length: 1448 
miRNA : ath-miR779.1
length: 21 
 
mfe: -28.9 kcal/mol 
p-value: 0.004396 
 
position  153 
target 5' G                G    G 
           AUG GCGGCGAUGUGG AGAA  
           UAC CGUCGUUGUAUC UCUU  
miRNA  3'     U            G      
 
 
target: AT3G09230.1 
length: 1448 
miRNA : ath-miR847
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.030150 
 
position  235 
target 5' G                    U 
           GUCGA AGGAGGAGGA UGA  
           UAGUU UUCUUCUCCU ACU  
miRNA  3' G     C          C     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_40844
AccessionTaxon
NP_181517Arabidopsis thaliana
NP_191132Arabidopsis thaliana
NP_001044814Oryza sativa Japonica Group
e_gw1.53.214.1Physcomitrella patens subsp. patens
e_gw1.72.10.1Physcomitrella patens subsp. patens
NP_187534 ( AT3G09230 )Arabidopsis thaliana
27798.m000612Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106414.100013996993432E-7148155IPR015495Myb transcription factor
PROSITEPS512940.050105IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.606.599998525264105E-1653104IPR012287Homeodomain-related
SMARTSM007173.2999980215445892E-1554103IPR001005SANT, DNA-binding
PfamPF002499.100000000000008E-1355100IPR014778Myb, DNA-binding
SuperFamilySSF466896.4E-2255123IPR009057Homeodomain-like
SMARTSM007173.2999980215445892E-15106154IPR001005SANT, DNA-binding
PROSITEPS512940.0106156IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PfamPF002494.900000000000004E-11107150IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.605.299996575502399E-15108156IPR012287Homeodomain-related
SuperFamilySSF466891.6E-9126155IPR009057Homeodomain-like