You are querying gene by "AT3G07390".

Locus: AT3G07390 Alias: AIR12

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 10080694

Basic gene information ( show / hide contents )

Locus AT3G07390 | Chromosome: 3 | Strand: +
Description response to auxin stimulus
Alias
AIR12( alias )
Gene model
AT3G07390.1 | From: 2365307 | To: 2366502
Sequence
AT3G07390.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
extracellular matrix structural constituent PMID: 10080694
cellular_component
extracellular region PMID: 10080694
plasma membrane PMID: 16618929
anchored to membrane PMID: 12068095
biological_process
response to auxin stimulus PMID: 10080694
extracellular matrix organization and biogenesis PMID: 10080694
lateral root morphogenesis PMID: 10080694
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G07390.1 
length: 1196 
miRNA : ath-miR164a
length: 21 
 
mfe: -30.2 kcal/mol 
p-value: 0.005080 
 
position  799 
target 5' A   C  G        C     C 
           GCA CG GCUCUGCU CUUCG  
           CGU GC CGGGACGA GAGGU  
miRNA  3' A      A        A       
 
 
target: AT3G07390.1 
length: 1196 
miRNA : ath-miR164b
length: 21 
 
mfe: -30.2 kcal/mol 
p-value: 0.008500 
 
position  799 
target 5' A   C  G        C     C 
           GCA CG GCUCUGCU CUUCG  
           CGU GC CGGGACGA GAGGU  
miRNA  3' A      A        A       
 
 
target: AT3G07390.1 
length: 1196 
miRNA : ath-miR164c
length: 21 
 
mfe: -30.2 kcal/mol 
p-value: 0.008037 
 
position  799 
target 5' A   C  G        C     C 
           GCA CG GCUCUGCU CUUCG  
           CGU GC CGGGACGA GAGGU  
miRNA  3' G      A        A       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51870
AccessionTaxon
NP_566306 ( AT3G07390 )Arabidopsis thaliana
NP_001062287Oryza sativa Japonica Group
NP_001063580Oryza sativa Japonica Group
28708.m000185Ricinus communis
28708.m000187Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM006645.3e-3269214IPR005018DOMON related
PROSITEPS5083617.32970186IPR005018DOMON related
PfamPF045261.2e-31112212IPR007613Protein of unknown function DUF568, DOMON-like