You are querying gene by "AT3G04670".

Locus: AT3G04670 Alias: AtWRKY39

Hormone Evidence Function category Gene Description PMID
salicylic acidTransgenic Hormone signal transduction member of WRKY Transcription Factor; Group II-d 20396965
Mutant Hormone signal transduction member of WRKY Transcription Factor; Group II-d 20396965

Basic gene information ( show / hide contents )

Locus AT3G04670 | Chromosome: 3 | Strand: -
Description member of WRKY Transcription Factor; Group II-d
Alias
AtWRKY39( alias )
WRKY39( alias )
Gene model
AT3G04670.1 | From: 1266301 | To: 1268293
AT3G04670.2 | From: 1266248 | To: 1268356
Sequence
AT3G04670.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT3G04670.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
calmodulin binding PMID: 15733871
transcription factor activity PMID:
cellular_component
nucleus PMID: 10785665
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
wrky39 20396965 mutant
35S:W39 20396965 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G04670.1 
length: 1824 
miRNA : ath-miR156h
length: 20 
 
mfe: -25.4 kcal/mol 
p-value: 0.006638 
 
position  369 
target 5' U  A            A    U 
           GU CUCUCUUUUUUC UGUC  
           CA GAGAGAAAGAAG ACAG  
miRNA  3'    C                 U 
 
 
target: AT3G04670.1 
length: 1824 
miRNA : ath-miR417
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.016108 
 
position  73 
target 5' C      U               U 
           UUGAGC AAAUUUGUUACCUUC  
           AGCUUG UUUAAGUGAUGGAAG  
miRNA  3'                          
 
 
target: AT3G04670.2 
length: 2027 
miRNA : ath-miR156h
length: 20 
 
mfe: -25.4 kcal/mol 
p-value: 0.007441 
 
position  432 
target 5' U  A            A    U 
           GU CUCUCUUUUUUC UGUC  
           CA GAGAGAAAGAAG ACAG  
miRNA  3'    C                 U 
 
 
target: AT3G04670.2 
length: 2027 
miRNA : ath-miR417
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.018037 
 
position  136 
target 5' C      U               U 
           UUGAGC AAAUUUGUUACCUUC  
           AGCUUG UUUAAGUGAUGGAAG  
miRNA  3'                          
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_69361
AccessionTaxon
NP_001030634Arabidopsis thaliana
NP_198217Arabidopsis thaliana
NP_566236 ( AT3G04670 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF105332.4E-13223259IPR018872Transcription factor, WRKY, Zn-cluster
PfamPF105333.7e-16223259IPR018872Transcription factor, WRKY, Zn-cluster
PROSITEPS508110.0256290IPR003657DNA-binding WRKY
PROSITEPS5081129.356256322IPR003657DNA-binding WRKY
SMARTSM007740.027000003535638622261289IPR003657DNA-binding WRKY
SMARTSM007744.6e-37261321IPR003657DNA-binding WRKY
PfamPF031066.80000000000001E-6263286IPR003657DNA-binding WRKY
PfamPF031062e-28263320IPR003657DNA-binding WRKY