You are querying gene by "AT3G02940".

Locus: AT3G02940 Alias: AtMYB107

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT3G02940 | Chromosome: 3 | Strand: +
Description response to salicylic acid stimulus
Alias
AtMYB107( alias )
MYB107( alias )
Gene model
AT3G02940.1 | From: 661880 | To: 664013
Sequence
AT3G02940.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to salicylic acid stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G02940.1 
length: 1231 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.022321 
 
position  107 
target 5' U    A    A            A 
           UGCG UGAG GCGGAU UAAAG  
           ACGC GUUU CGCCUA AUUUC  
miRNA  3'           A      U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_34010
AccessionTaxon
NP_174726Arabidopsis thaliana
NP_001057174Oryza sativa Japonica Group
NP_001062095Oryza sativa Japonica Group
NP_186944 ( AT3G02940 )Arabidopsis thaliana
NP_197179Arabidopsis thaliana
NP_974792Arabidopsis thaliana
30054.m000809Ricinus communis
NP_001048154Oryza sativa Japonica Group
NP_001056595Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106414.500010229032805E-1243317IPR015495Myb transcription factor
PROSITEPS512940.0961IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.601.4999997758334064E-161264IPR012287Homeodomain-related
SMARTSM007174.600000443308617E-161363IPR001005SANT, DNA-binding
PfamPF002493.1000000000000024E-131461IPR014778Myb, DNA-binding
SuperFamilySSF466895.6E-251483IPR009057Homeodomain-like
PROSITEPS512940.062116IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007171.29999924468179E-1666114IPR001005SANT, DNA-binding
PfamPF002498.600000000000006E-1367111IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.604.800008308767011E-1868116IPR012287Homeodomain-related
SuperFamilySSF466892.7E-1386146IPR009057Homeodomain-like