You are querying gene by "AT3G02260".

Locus: AT3G02260 Alias: ASA1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - auxin polar transport 11485992

Basic gene information ( show / hide contents )

Locus AT3G02260 | Chromosome: 3 | Strand: -
Description auxin polar transport
Alias
ASA1( alias )
BIG( alias )
CRM1( alias )
DOC1( alias )
LPR1( alias )
TIR3( alias )
UMB1( alias )
Gene model
AT3G02260.1 | From: 430991 | To: 448496
Sequence
AT3G02260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
zinc ion binding PMID:
binding PMID:
ubiquitin-protein ligase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
indeterminate inflorescence morphogenesis PMID:
response to auxin stimulus PMID: 11485992
auxin polar transport PMID: 11485992
photomorphogenesis PMID: 8314087
root development PMID: 15681664
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR159c
length: 21 
 
mfe: -27.0 kcal/mol 
p-value: 0.170531 
 
position  14513 
target 5' C                 G    U 
           AGGAGCUUCUUUUAG C CGGA  
           UCCUCGAGGGAAGUU G GUUU  
miRNA  3'                 A        
 
 
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR2938
length: 21 
 
mfe: -29.0 kcal/mol 
p-value: 0.088737 
 
position  890 
target 5' U     G             G 
           UGGGA UCUUUCAAAAGAU  
           ACCUU GGAGAGUUUUCUA  
miRNA  3' G     G             G 
 
 
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR319c
length: 21 
 
mfe: -28.4 kcal/mol 
p-value: 0.131159 
 
position  14513 
target 5' C                 G   A 
           AGGAGCUUCUUUUAG C CGG  
           UCCUCGAGGGAAGUC G GUU  
miRNA  3' U               A       
 
 
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR779.1
length: 21 
 
mfe: -27.7 kcal/mol 
p-value: 0.084543 
 
position  3877 
target 5' U      U             U 
           AUGAGU GCAACGUGG AGA  
           UACUCG CGUUGUAUC UCU  
miRNA  3'        U         G   U 
 
 
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR851-3p
length: 21 
 
mfe: -27.9 kcal/mol 
p-value: 0.019437 
 
position  761 
target 5' U      G            G 
           UCG CU UGUUUGUCGCCU  
           AGC GA ACAAACGGUGGG  
miRNA  3' C   A  A            U 
 
 
target: AT3G02260.1 
length: 15465 
miRNA : ath-miR870
length: 21 
 
mfe: -22.4 kcal/mol 
p-value: 0.343857 
 
position  2847 
target 5' U     U               A 
           GUUGG AGAAAUAUCGAGUUG  
           UAGCU UCUUUGUGGUUUAAU  
miRNA  3' C                       
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT3G02260AT5G51810negativeotherN/Amolecular15634200

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14191
AccessionTaxon
NP_186875 ( AT3G02260 )Arabidopsis thaliana
e_gw1.42.93.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_310173Physcomitrella patens subsp. patens
29790.m000839Ricinus communis
0300010340Ostreococcus tauri
NP_001062664Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003961e-1715731645IPR013993Zinc finger, N-recognin, metazoa
PROSITEPS511578.49115731644IPR003126Zinc finger, N-recognin
SuperFamilySSF509788.7e-0717752020IPR011046WD40 repeat-like-containing domain
SMARTSM002912.4e-1026122655IPR000433Zinc finger, ZZ-type
PROSITEPS5013511.91526122646IPR000433Zinc finger, ZZ-type
PfamPF005693.4e-0926152647IPR000433Zinc finger, ZZ-type
PROSITEPS01357NA26182645IPR000433Zinc finger, ZZ-type