You are querying gene by "AT3G01040".

Locus: AT3G01040 Alias: GAUT13

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT3G01040 | Chromosome: 3 | Strand: +
Description Encodes a protein with putative galacturonosyltransferase activity.
Alias
GAUT13( alias )
Gene model
AT3G01040.1 | From: 8964 | To: 12429
Sequence
AT3G01040.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
polygalacturonate 4-alpha-galacturonosyltransferase activity PMID: 16540543
transferase activity, transferring glycosyl groups PMID:
transferase activity, transferring hexosyl groups PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
carbohydrate biosynthetic process PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169h
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.017870 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169i
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.021709 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169j
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.022158 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169k
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.022796 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169l
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.024091 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169m
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.021975 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR169n
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.019807 
 
position  1180 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR396a
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.022999 
 
position  1546 
target 5' A  G    U            A 
           AG UUAA GGAGCUGUGGAG  
           UC AGUU UUUCGACACCUU  
miRNA  3' G  A    C              
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR396b
length: 21 
 
mfe: -26.7 kcal/mol 
p-value: 0.016473 
 
position  1545 
target 5' G   G    U            A 
           AAG UUAA GGAGCUGUGGAG  
           UUC AGUU UUUCGACACCUU  
miRNA  3'     A    C              
 
 
target: AT3G01040.1 
length: 2502 
miRNA : ath-miR832-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.012645 
 
position  352 
target 5' G                    G 
           UUGUUU GGUUGGGGAUUGG  
           AACGAA CUAACCCUUAGUU  
miRNA  3' G      C               
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169h
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.017849 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169i
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.021679 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169j
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.022131 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169k
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.022777 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169l
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.024064 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169m
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.021949 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR169n
length: 21 
 
mfe: -26.9 kcal/mol 
p-value: 0.019791 
 
position  1177 
target 5' G      U             U 
           CGGGUA G CAUUCUUGGUU  
           GUCCGU C GUAGGAACCGA  
miRNA  3'        U A           U 
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR396a
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.022969 
 
position  1543 
target 5' A  G    U            A 
           AG UUAA GGAGCUGUGGAG  
           UC AGUU UUUCGACACCUU  
miRNA  3' G  A    C              
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR396b
length: 21 
 
mfe: -26.7 kcal/mol 
p-value: 0.016448 
 
position  1542 
target 5' G   G    U            A 
           AAG UUAA GGAGCUGUGGAG  
           UUC AGUU UUUCGACACCUU  
miRNA  3'     A    C              
 
 
target: AT3G01040.2 
length: 2499 
miRNA : ath-miR832-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.012628 
 
position  352 
target 5' G                    G 
           UUGUUU GGUUGGGGAUUGG  
           AACGAA CUAACCCUUAGUU  
miRNA  3' G      C               
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_33963
AccessionTaxon
NP_001118545Arabidopsis thaliana
NP_186753 ( AT3G01040 )Arabidopsis thaliana
NP_197051Arabidopsis thaliana
NP_001049351Oryza sativa Japonica Group
NP_001067123Oryza sativa Japonica Group
estExt_gwp_gw1.C_100063Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_160220Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_18000059Physcomitrella patens subsp. patens
29630.m000787Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF015011.1000000000000126E-67173505IPR002495Glycosyl transferase, family 8
PfamPF015011.4e-70174506IPR002495Glycosyl transferase, family 8