You are querying gene by "AT2G47750".

Locus: AT2G47750 Alias: GH3.9

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus

Basic gene information ( show / hide contents )

Locus AT2G47750 | Chromosome: 2 | Strand: -
Description response to auxin stimulus
Alias
GH3.9( alias )
Gene model
AT2G47750.1 | From: 19567197 | To: 19570261
Sequence
AT2G47750.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to auxin stimulus PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G47750.1 
length: 2155 
miRNA : ath-miR417
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.003733 
 
position  2033 
target 5' C   U                U 
           CGA CGAAUUCGCUGCUUUU  
           GCU GUUUAAGUGAUGGAAG  
miRNA  3' A   U                  
 
 
target: AT2G47750.1 
length: 2155 
miRNA : ath-miR776
length: 21 
 
mfe: -22.2 kcal/mol 
p-value: 0.070307 
 
position  1770 
target 5' A  G             A     G 
           GA AUCGAUAGGGG C UUAGA  
           UU UAGUUAUCUUC G AAUCU  
miRNA  3'    G           U         
 
 
target: AT2G47750.1 
length: 2155 
miRNA : ath-miR833-5p
length: 22 
 
mfe: -25.1 kcal/mol 
p-value: 0.028274 
 
position  1609 
target 5' C      G             U 
           CUGG C GAGUACA CGAGC  
           GAUC G CUCAUGU GUUUG  
miRNA  3' U    U G       U     U 
 
 
target: AT2G47750.1 
length: 2155 
miRNA : ath-miR844
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.012852 
 
position  854 
target 5' C     G         U    U 
           GUUUA GAGCAGUCU UGCU  
           CGAAU UUCGUUAGA AUGG  
miRNA  3' U     A              U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14809
AccessionTaxon
NP_001031874Arabidopsis thaliana
NP_174134Arabidopsis thaliana
NP_196839Arabidopsis thaliana
NP_196840Arabidopsis thaliana
NP_196841Arabidopsis thaliana
NP_196842Arabidopsis thaliana
NP_001044345Oryza sativa Japonica Group
NP_001044467Oryza sativa Japonica Group
NP_001055967Oryza sativa Japonica Group
NP_001060084Oryza sativa Japonica Group
NP_001060085Oryza sativa Japonica Group
NP_001060163Oryza sativa Japonica Group
27533.m000079Ricinus communis
28152.m000872Ricinus communis
29970.m001008Ricinus communis
30128.m008575Ricinus communis
30129.m000366Ricinus communis
NP_173729Arabidopsis thaliana
NP_175299Arabidopsis thaliana
NP_196836Arabidopsis thaliana
NP_199960Arabidopsis thaliana
NP_176159Arabidopsis thaliana
NP_179101Arabidopsis thaliana
NP_179898Arabidopsis thaliana
NP_182296 ( AT2G47750 )Arabidopsis thaliana
NP_194456Arabidopsis thaliana
NP_195455Arabidopsis thaliana
NP_200262Arabidopsis thaliana
NP_849718Arabidopsis thaliana
estExt_Genewise1.C_3230045Physcomitrella patens subsp. patens
NP_175300Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF033210.011562IPR004993GH3 auxin-responsive promoter