You are querying gene by "AT2G46870".

Locus: AT2G46870 Alias: NGA1

Hormone Evidence Function category Gene Description PMID
auxinTransgenic Hormone biosynthesis NGATHA1 (NGA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA2 (NGATHA2); transcription factor (TAIR:AT3G61970.1); Has 734 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 19435937
Mutant Hormone biosynthesis NGATHA1 (NGA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA2 (NGATHA2); transcription factor (TAIR:AT3G61970.1); Has 734 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 19435937

Basic gene information ( show / hide contents )

Locus AT2G46870 | Chromosome: 2 | Strand: +
Description NGATHA1 (NGA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA2 (NGATHA2); transcription factor (TAIR:AT3G61970.1); Has 734 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Alias
NGA1( alias )
Gene model
AT2G46870.1 | From: 19267987 | To: 19269473
Sequence
AT2G46870.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
cellular_component_unknown PMID:
biological_process
flower development PMID: 16603651
leaf development PMID: 16603651
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
nga1 nga2 nga3 nga4 19435937 mutant
amiR-NGA 19435937 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G46870.1 
length: 1487 
miRNA : ath-miR780.2
length: 21 
 
mfe: -28.6 kcal/mol 
p-value: 0.001585 
 
position  762 
target 5' U        G     G      A 
           GUGUCGGA AUUCA GAAGAG  
           UACGGUCU UAAGU CUUCUU  
miRNA  3'          A     G        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37260
AccessionTaxon
NP_171611Arabidopsis thaliana
NP_192059Arabidopsis thaliana
NP_566089 ( AT2G46870 )Arabidopsis thaliana
NP_001047754Oryza sativa Japonica Group
NP_001048792Oryza sativa Japonica Group
30068.m002615Ricinus communis
30076.m004471Ricinus communis
NP_191756Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023621.3000000000000006E-2735140IPR003340Transcriptional factor B3
PROSITEPS508630.035141IPR003340Transcriptional factor B3