You are querying gene by "AT2G46830".

Locus: AT2G46830 Alias: CCA1

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
abscisic acidMutant Hormone signal transduction Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. 19542296
GeneOntology - response to abscisic acid stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
GibberellinMutant Hormone signal transduction Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. 19542296

Basic gene information ( show / hide contents )

Locus AT2G46830 | Chromosome: 2 | Strand: +
Description response to salicylic acid stimulus
Alias
CCA1( alias )
Gene model
AT2G46830.1 | From: 19252746 | To: 19255978
AT2G46830.2 | From: 19253750 | To: 19255983
Sequence
AT2G46830.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G46830.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 18344319
transcription repressor activity PMID: 11486091
transcription factor activity PMID: 11118137
transcription activator activity PMID: 9144958
biological_process
circadian rhythm PMID: 9657153
response to auxin stimulus PMID: 16463103
response to organic nitrogen PMID: 18344319
response to gibberellin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  abscisic acid     gibberellin  

[   abscisic acid   ]

Genotype PMID Type
lhy cca1 19542296 mutant

[   gibberellin   ]

Genotype PMID Type
lhy cca1 19542296 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G46830.1 
length: 2268 
miRNA : ath-miR404
length: 24 
 
mfe: -37.0 kcal/mol 
p-value: 0.001538 
 
position  1189 
target 5' A                  C     G 
           CUGUUGCAGCUGCUAGUG UUGGU  
           GACGGCGUUGGCGGUCGC AAUUA  
miRNA  3' C                          
 
 
target: AT2G46830.1 
length: 2268 
miRNA : ath-miR779.1
length: 21 
 
mfe: -28.2 kcal/mol 
p-value: 0.010593 
 
position  373 
target 5' U                     G 
           AUG GUAG AGCAUGGCAGAA  
           UAC CGUC UUGUAUCGUCUU  
miRNA  3'     U    G              
 
 
target: AT2G46830.2 
length: 1882 
miRNA : ath-miR404
length: 24 
 
mfe: -37.0 kcal/mol 
p-value: 0.001190 
 
position  798 
target 5' A                  C     G 
           CUGUUGCAGCUGCUAGUG UUGGU  
           GACGGCGUUGGCGGUCGC AAUUA  
miRNA  3' C                          
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_71035
AccessionTaxon
NP_850460 ( AT2G46830 )Arabidopsis thaliana
NP_850461Arabidopsis thaliana
112628Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF466898.5e-161876IPR009057Homeodomain-like
PROSITEPS5129421.2701973IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
TIGRFAMTIGR015574e-242272IPR006447Myb-like DNA-binding domain, SHAQKYF class
SMARTSM007171e-122371IPR001005SANT, DNA-binding
PfamPF002497e-132468IPR014778Myb, DNA-binding