You are querying gene by "AT2G44950".

Locus: AT2G44950 Alias: HUB1

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. 19286969
ethyleneMutant Hormone signal transduction The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. 19286969

Basic gene information ( show / hide contents )

Locus AT2G44950 | Chromosome: 2 | Strand: -
Description The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.
Alias
HUB1( alias )
Gene model
AT2G44950.1 | From: 18549369 | To: 18555666
Sequence
AT2G44950.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID:
zinc ion binding PMID:
ubiquitin-protein ligase activity PMID: 17329565
cellular_component
nucleus PMID: 17329563
mitochondrion PMID: 14671022
biological_process
histone monoubiquitination PMID: 17329563
regulation of G2/M transition of mitotic cell cycle PMID: 17329565
protein monoubiquitination PMID: 17329565
cell division PMID: 17329565
leaf morphogenesis PMID: 17329565
cell growth PMID: 17329565
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  salicylic acid     ethylene  

[   salicylic acid   ]

Genotype PMID Type
hub1-4 19286969 mutant
hub1-6 19286969 mutant

[   ethylene   ]

Genotype PMID Type
hub1-4 19286969 mutant
hub1-6 19286969 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR172a
length: 21 
 
mfe: -24.3 kcal/mol 
p-value: 0.055504 
 
position  1035 
target 5' U     A       C   G  G 
           UGCAG GUCAUCG GAU CU  
           ACGUC UAGUAGU CUA GA  
miRNA  3' U     G       U   A    
 
 
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR172b
length: 21 
 
mfe: -24.3 kcal/mol 
p-value: 0.058339 
 
position  1035 
target 5' U     A       C   G  G 
           UGCAG GUCAUCG GAU CU  
           ACGUC UAGUAGU CUA GA  
miRNA  3' U     G       U   A    
 
 
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR172c
length: 21 
 
mfe: -24.5 kcal/mol 
p-value: 0.064216 
 
position  1035 
target 5' U     A       C   G  G 
           UGCAG GUCAUCG GAU CU  
           ACGUC UAGUAGU CUA GA  
miRNA  3' G     G       U   A    
 
 
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR172d
length: 21 
 
mfe: -24.5 kcal/mol 
p-value: 0.055315 
 
position  1035 
target 5' U     A       C   G  G 
           UGCAG GUCAUCG GAU CU  
           ACGUC UAGUAGU CUA GA  
miRNA  3' G     G       U   A    
 
 
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR779.1
length: 21 
 
mfe: -26.2 kcal/mol 
p-value: 0.039129 
 
position  1978 
target 5' C   U  G  G        U   G 
           UGA GC AG GACAUAGC GAA  
           ACU CG UC UUGUAUCG CUU  
miRNA  3' U         G        U     
 
 
target: AT2G44950.1 
length: 3370 
miRNA : ath-miR782
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.070990 
 
position  865 
target 5' C    G           C  A 
           AGAG AUUUGAGGUGU UG  
           UCUU UAGGUUCCACA AC  
miRNA  3' U    G           A  A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11675
AccessionTaxon
NP_182022 ( AT2G44950 )Arabidopsis thaliana
NP_001065421Oryza sativa Japonica Group
e_gw1.14.29.1Physcomitrella patens subsp. patens
e_gw1.215.2.1Physcomitrella patens subsp. patens
e_gw1.381.3.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_2420077Physcomitrella patens subsp. patens
estExt_Genewise1.C_460169Physcomitrella patens subsp. patens
30133.m000233Ricinus communis
NP_001154428Arabidopsis thaliana
NP_564680Arabidopsis thaliana
173081Chlamydomonas reinhardtii
fgenesh1_pg.C_Chr_03.0001000362Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM001844.500000347393468E-6826864IPR001841Zinc finger, RING-type
PROSITEPS500890.0826865IPR001841Zinc finger, RING-type
PROSITEPS005180.0841850IPR017907Zinc finger, RING-type, conserved site