You are querying gene by "AT2G40750".

Locus: AT2G40750 Alias: AtWRKY54

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction transcription factor 17096590

Basic gene information ( show / hide contents )

Locus AT2G40750 | Chromosome: 2 | Strand: -
Description transcription factor
Alias
AtWRKY54( alias )
WRKY54( alias )
Gene model
AT2G40750.1 | From: 17007532 | To: 17009546
Sequence
AT2G40750.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 10785665
cellular_component
nucleus PMID:
biological_process
regulation of transcription, DNA-dependent PMID: 10785665
regulation of defense response PMID: 17096590
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
wrky54 wrky70 17096590 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G40750.1 
length: 1337 
miRNA : ath-miR825
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.014649 
 
position  89 
target 5' A    U         G      A 
           UUCA UGUAUCUUU UGAGAA  
           AAGU ACGUGGAAG ACUCUU  
miRNA  3' C              A        
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G40750Salicylic acidnegativeotherN/Amutance17096590
AT2G40750W-boxPositivetransciptN/Amutance17096590

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_40845
AccessionTaxon
NP_181607 ( AT2G40750 )Arabidopsis thaliana
NP_191199Arabidopsis thaliana
NP_001055192Oryza sativa Japonica Group
29729.m002369Ricinus communis
29915.m000479Ricinus communis
NP_001050033Oryza sativa Japonica Group
NP_001060645Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5081120.266146214IPR003657DNA-binding WRKY
SMARTSM007744.7e-36151213IPR003657DNA-binding WRKY
PfamPF031069.4e-24152212IPR003657DNA-binding WRKY