You are querying gene by "AT2G39940".

Locus: AT2G39940 Alias: COI1

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone receptor Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A key regulator of JA signal pathway. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. 9582125 12244256
GeneOntology - jasmonic acid mediated signaling pathway 15860010

Basic gene information ( show / hide contents )

Locus AT2G39940 | Chromosome: 2 | Strand: -
Description Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A key regulator of JA signal pathway. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.
Alias
COI1( alias )
Gene model
AT2G39940.1 | From: 16679571 | To: 16682826
Sequence
AT2G39940.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 17637677
ubiquitin-protein ligase activity PMID: 9582125
cellular_component
SCF ubiquitin ligase complex PMID: 16021335
biological_process
defense response to fungus PMID: 17513501
response to wounding PMID: 16021335
jasmonic acid and ethylene-dependent systemic resistance PMID: 11418339
stomatal movement PMID: 16959575
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process PMID: 17637675
defense response to bacterium PMID: 16959575
response to jasmonic acid stimulus PMID: 16021335
ubiquitin-dependent protein catabolic process PMID: 11019805
jasmonic acid mediated signaling pathway PMID: 15860010
defense response PMID: 9582125
response to insect PMID: 15923339
negative regulation of defense response PMID: 16732289
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
coi1-1 9582125 12244256 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G39940.1 
length: 2396 
miRNA : ath-miR779.2
length: 21 
 
mfe: -21.6 kcal/mol 
p-value: 0.058032 
 
position  570 
target 5' G     C               A 
           GGUUA UGAGAUUUCUAA CA  
           UCAGU GCUUUAAAGGUU GU  
miRNA  3'       U            A    
 
 
target: AT2G39940.1 
length: 2396 
miRNA : ath-miR823
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.048326 
 
position  2190 
target 5' U G                 C 
           U UUGUAUGGUCAUUACUU  
           A AAUAUACUAGUGGUGGG  
miRNA  3' U G                 U 
 
 
target: AT2G39940.1 
length: 2396 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.055315 
 
position  1317 
target 5' G  C               G  G 
           UG AGAUGAACAAGGAAU GA  
           AC UUUGCUUGUUCUUUG CU  
miRNA  3'                    A  A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G3994013-LOXnegativeotherN/Amutance12244256
AT2G39940AT1G19180negativeprotein degradationN/Amutance17637677
AT2G39940AT1G64280negativeotherN/Amolecular16039901
AT2G39940AT1G64990PositiveotherN/Amolecular17220365
AT2G39940AT3G17860negativeprotein degradationN/Amutance17637675
AT2G39940AT3G56400negativeotherN/Amutance14742872
AT2G39940AT4G27630PositiveotherN/Amolecular17220365
AT2G39940AT5G13630PositiveotherN/Amolecular17220365
AT2G39940CEX1negativeotherN/Amutance11311233
AT2G39940CamalexinPositiveotherN/Amutance9136027
AT2G39940HRL1PositiveotherN/AGO/othersN/A
AT2G39940[NADPHOX]PositiveotherN/Amolecular10377995

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37490
AccessionTaxon
NP_565919 ( AT2G39940 )Arabidopsis thaliana
NP_001044831Oryza sativa Japonica Group
NP_001049649Oryza sativa Japonica Group
NP_001055700Oryza sativa Japonica Group
e_gw1.24.115.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2770011Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2110072Physcomitrella patens subsp. patens
29610.m000411Ricinus communis

No related Cross Link information for this gene.