You are querying gene by "AT2G39800".

Locus: AT2G39800 Alias: ATP5CS

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 7773306

Basic gene information ( show / hide contents )

Locus AT2G39800 | Chromosome: 2 | Strand: -
Description response to abscisic acid stimulus
Alias
ATP5CS( alias )
P5CS1( alias )
Gene model
AT2G39800.2 | From: 16605245 | To: 16610137
AT2G39800.1 | From: 16605242 | To: 16610397
Sequence
AT2G39800.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G39800.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
delta1-pyrroline-5-carboxylate synthetase activity PMID: 10441499
cellular_component
cytoplasm PMID:
biological_process
proline biosynthetic process PMID: 10441499
response to water deprivation PMID: 10441499
response to salt stress PMID: 7773306
hyperosmotic salinity response PMID: 7773306
response to desiccation PMID: 7773306
response to abscisic acid stimulus PMID: 7773306
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
Urea cycle and metabolism of amino groups glutamate-5-semialdehyde dehydrogenase
Urea cycle and metabolism of amino groups glutamate 5-kinase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G39800.1 
length: 2886 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.044805 
 
position  2373 
target 5' G       G     G     C 
           GUGCAGA GUGGG GUAAG  
           CGCGUUU CGCCU UAUUU  
miRNA  3' A       A     A     C 
 
 
target: AT2G39800.1 
length: 2886 
miRNA : ath-miR838
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.022759 
 
position  2373 
target 5' G                U   C 
           GUGC AGAGGUGGGGG AAG  
           CACG UCUUCAUCUUC UUU  
miRNA  3' A    U           U     
 
 
target: AT2G39800.1 
length: 2886 
miRNA : ath-miR847
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.051357 
 
position  1078 
target 5' G               U     C 
           AUUAGGGAGAGGGGG A UGA  
           UAGUUCUUCUUCUCC U ACU  
miRNA  3' G                 C     
 
 
target: AT2G39800.2 
length: 2519 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.039256 
 
position  2009 
target 5' G       G     G     C 
           GUGCAGA GUGGG GUAAG  
           CGCGUUU CGCCU UAUUU  
miRNA  3' A       A     A     C 
 
 
target: AT2G39800.2 
length: 2519 
miRNA : ath-miR838
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.019820 
 
position  2009 
target 5' G                U   C 
           GUGC AGAGGUGGGGG AAG  
           CACG UCUUCAUCUUC UUU  
miRNA  3' A    U           U     
 
 
target: AT2G39800.2 
length: 2519 
miRNA : ath-miR847
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.046784 
 
position  714 
target 5' G               U     C 
           AUUAGGGAGAGGGGG A UGA  
           UAGUUCUUCUUCUCC U ACU  
miRNA  3' G                 C     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11104
AccessionTaxon
NP_001118846Arabidopsis thaliana
NP_181510 ( AT2G39800 )Arabidopsis thaliana
NP_191120Arabidopsis thaliana
NP_973641Arabidopsis thaliana
130812Chlamydomonas reinhardtii
NP_001044802Oryza sativa Japonica Group
NP_001055723Oryza sativa Japonica Group
gw1.10.00.92.1Ostreococcus tauri
e_gw1.22.25.1Physcomitrella patens subsp. patens
30143.m001194Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF006962.6000000000000002E-201157IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMTIGR010920.01614IPR005766Delta l-pyrroline-5-carboxylate synthetase
SuperFamilySSF536333.4E-311178IPR001048Aspartate/glutamate/uridylate kinase
PIRPIRSF03642901716IPR005766Delta l-pyrroline-5-carboxylate synthetase
Gene3DG3DSA:3.40.1160.109.9e-188282IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMTIGR0109208717IPR005766Delta l-pyrroline-5-carboxylate synthetase
SuperFamilySSF536333.7e-5314281IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006963.9e-3715260IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMTIGR010277e-2615342IPR005715Glutamate 5-kinase, ProB-related
PRINTSPR004744.699982625131954E-333354IPR001057Glutamate 5-kinase
Gene3DG3DSA:3.40.1160.105.399999773511721E-736173IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004743.3e-565266IPR001057Glutamate 5-kinase
PRINTSPR004744.699982625131954E-337299IPR001057Glutamate 5-kinase
PRINTSPR004743.3e-5696124IPR001057Glutamate 5-kinase
PROSITEPS009020.0129146IPR019797Glutamate 5-kinase, conserved site
PRINTSPR004744.699982625131954E-33131151IPR001057Glutamate 5-kinase
PRINTSPR004743.3e-56136157IPR001057Glutamate 5-kinase
PRINTSPR004743.3e-56175202IPR001057Glutamate 5-kinase
Gene3DG3DSA:3.40.605.106.200014864426819E-56177404IPR016162Aldehyde dehydrogenase, N-terminal
PfamPF001713.799999999999999E-5188455IPR015590Aldehyde dehydrogenase
SuperFamilySSF537204.9E-99188597IPR016161Aldehyde/histidinol dehydrogenase
TIGRFAMTIGR004070.0199587IPR000965Gamma-glutamyl phosphate reductase GPR
PROSITEPS00902NA232249IPR019797Glutamate 5-kinase, conserved site
PRINTSPR004743.3e-56234254IPR001057Glutamate 5-kinase
Gene3DG3DSA:3.40.605.105.9e-56280507IPR016162Aldehyde dehydrogenase, N-terminal
PfamPF001716.8e-08291558IPR015590Aldehyde dehydrogenase
SuperFamilySSF537204.9e-99291700IPR016161Aldehyde/histidinol dehydrogenase
TIGRFAMTIGR004078.9e-161302690IPR000965Gamma-glutamyl phosphate reductase GPR
Gene3DG3DSA:3.40.309.103.800006970935447E-64405578IPR016163Aldehyde dehydrogenase, C-terminal
PROSITEPS012230.0504525IPR020593Gamma-glutamyl phosphate reductase GPR, conserved site
Gene3DG3DSA:3.40.309.103.6e-64508681IPR016163Aldehyde dehydrogenase, C-terminal
PROSITEPS01223NA607628IPR020593Gamma-glutamyl phosphate reductase GPR, conserved site