You are querying gene by "AT2G38120".

Locus: AT2G38120 Alias: AUX1

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus
auxinMutant Hormone transportion 16667854 7704045
GeneOntology - auxin polar transport 16839804

Basic gene information ( show / hide contents )

Locus AT2G38120 | Chromosome: 2 | Strand: +
Description
Alias
AUX1( alias )
MAP1( alias )
PIR1( alias )
WAV5( alias )
Gene model
AT2G38120.1 | From: 15980071 | To: 15984258
Sequence
AT2G38120.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
auxin influx transmembrane transporter activity PMID: 16677815
transporter activity PMID:
amino acid transmembrane transporter activity PMID: 9484486
cellular_component
membrane PMID:
endosome PMID: 17114355
cell surface PMID: 11641271
Golgi apparatus PMID: 17114355
plasma membrane PMID: 16690816
biological_process
response to auxin stimulus PMID:
positive gravitropism PMID: 8688077
lateral root formation PMID: 17215297
response to nematode PMID: 16478044
response to ethylene stimulus PMID:
amino acid transport PMID:
root hair cell differentiation PMID: 17084699
auxin polar transport PMID: 16839804
establishment of planar polarity PMID: 17084699
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
aux1-7 16667854 mutant
aux1-7 axr4-1 7704045 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G38120.1 
length: 2135 
miRNA : ath-miR2934
length: 21 
 
mfe: -28.0 kcal/mol 
p-value: 0.003915 
 
position  1766 
target 5' U     U              U 
           UCUAA GCGUUUGUGGAGGG  
           AGGUU CGCAAACGUCUUUC  
miRNA  3'       C              U 
 
 
target: AT2G38120.1 
length: 2135 
miRNA : ath-miR838
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.032674 
 
position  290 
target 5' A   C G            C  U 
           UGU G AAGGAGUAGAAG GA  
           ACA C UUCUUCAUCUUC UU  
miRNA  3'       G            U  U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G38120AT1G19220negativeotherN/Amutance17900969
AT2G38120AT1G19850negativeotherN/Amutance17900969
AT2G38120AT1G30330negativeotherN/Amutance17900969
AT2G38120AT1G59750negativeotherN/Amutance17900969
AT2G38120AT1G77850negativeotherN/Amutance17900969
AT2G38120AT2G24765negativeotherN/Amutance17900969
AT2G38120AT2G28350negativeotherN/Amutance17900969
AT2G38120AT4G30080negativeotherN/Amutance17900969
AT2G38120AT5G20730negativeotherN/Amutance17900969
AT2G38120AT5G37020negativeotherN/Amutance17900969
AT2G38120AT5G60450negativeotherN/Amutance17900969
AT2G38120AT5G62000negativeotherN/Amutance17900969

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_20330
AccessionTaxon
e_gw1.211.17.1Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_213000015Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_900031Physcomitrella patens subsp. patens
NP_177892Arabidopsis thaliana
NP_179701Arabidopsis thaliana
NP_195744Arabidopsis thaliana
NP_565882 ( AT2G38120 )Arabidopsis thaliana
NP_974719Arabidopsis thaliana
NP_001044846Oryza sativa Japonica Group
NP_001049534Oryza sativa Japonica Group
NP_001055693Oryza sativa Japonica Group
NP_001064161Oryza sativa Japonica Group
NP_001065850Oryza sativa Japonica Group
e_gw1.279.36.1Physcomitrella patens subsp. patens
29669.m000821Ricinus communis
29741.m000142Ricinus communis
29908.m006146Ricinus communis
29969.m000264Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF014902.9000000000000262E-8044437IPR013057Amino acid transporter, transmembrane