You are querying gene by "AT2G37340".

Locus: AT2G37340 Alias: atRSZ33

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT2G37340 | Chromosome: 2 | Strand: -
Description encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.
Alias
atRSZ33( alias )
RSZ33( alias )
Gene model
AT2G37340.2 | From: 15677226 | To: 15679779
AT2G37340.3 | From: 15677226 | To: 15679779
AT2G37340.1 | From: 15677226 | To: 15679779
Sequence
AT2G37340.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G37340.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G37340.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
nucleotide binding PMID:
zinc ion binding PMID:
nucleic acid binding PMID:
cellular_component
nuclear speck PMID: 15686520
biological_process
nuclear mRNA splicing, via spliceosome PMID: 12176998
spliceosome assembly PMID: 12176998
RNA splicing PMID: 16807317
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G37340.1 
length: 1180 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -31.4 kcal/mol 
p-value: 0.000387 
 
position  190 
target 5' A    G                C 
           GUGC AGAUGUGGAUAUGAAG  
           CGCG UUUACGCCUAUAUUUC  
miRNA  3' A                       
 
 
target: AT2G37340.1 
length: 1180 
miRNA : ath-miR842
length: 21 
 
mfe: -36.6 kcal/mol 
p-value: 0.000226 
 
position  786 
target 5' A   A U               C 
           GGA G CGGAUCUGACCGUGA  
           CCU C GCCUAGACUGGUACU  
miRNA  3'     A U                 
 
 
target: AT2G37340.2 
length: 1320 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -31.4 kcal/mol 
p-value: 0.000459 
 
position  190 
target 5' A    G                C 
           GUGC AGAUGUGGAUAUGAAG  
           CGCG UUUACGCCUAUAUUUC  
miRNA  3' A                       
 
 
target: AT2G37340.2 
length: 1320 
miRNA : ath-miR842
length: 21 
 
mfe: -36.6 kcal/mol 
p-value: 0.000267 
 
position  926 
target 5' A   A U               C 
           GGA G CGGAUCUGACCGUGA  
           CCU C GCCUAGACUGGUACU  
miRNA  3'     A U                 
 
 
target: AT2G37340.3 
length: 1398 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -31.4 kcal/mol 
p-value: 0.000500 
 
position  408 
target 5' A    G                C 
           GUGC AGAUGUGGAUAUGAAG  
           CGCG UUUACGCCUAUAUUUC  
miRNA  3' A                       
 
 
target: AT2G37340.3 
length: 1398 
miRNA : ath-miR842
length: 21 
 
mfe: -36.6 kcal/mol 
p-value: 0.000290 
 
position  1004 
target 5' A   A U               C 
           GGA G CGGAUCUGACCGUGA  
           CCU C GCCUAGACUGGUACU  
miRNA  3'     A U                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16650
AccessionTaxon
NP_190918Arabidopsis thaliana
NP_850280 ( AT2G37340 )Arabidopsis thaliana
NP_851015Arabidopsis thaliana
NP_973620Arabidopsis thaliana
NP_001049771Oryza sativa Japonica Group
NP_001054489Oryza sativa Japonica Group
29805.m001527Ricinus communis
NP_973619Arabidopsis thaliana
NP_001042066Oryza sativa Japonica Group
NP_001054731Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS501020.0140IPR000504RNA recognition motif, RNP-1
PfamPF000760.079233IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:3.30.70.3304.399999674397421E-4340IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3301.7000029559006478E-209100IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.01181IPR000504RNA recognition motif, RNP-1
SMARTSM003609.000004079572741E-201277IPR000504RNA recognition motif, RNP-1
PfamPF000764.8000000000000086E-111374IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:4.10.60.101.799999516546764E-846101IPR013084Zinc finger, CCHC retroviral-type
Gene3DG3DSA:4.10.60.101.799999516546764E-857112IPR013084Zinc finger, CCHC retroviral-type
PfamPF000984.0000000000000013E-45974IPR001878Zinc finger, CCHC-type
SMARTSM003436.80000200614765E-55975IPR001878Zinc finger, CCHC-type
PROSITEPS501580.05973IPR001878Zinc finger, CCHC-type
PfamPF000984.1999999999999985E-47085IPR001878Zinc finger, CCHC-type
SMARTSM003436.80000200614765E-57086IPR001878Zinc finger, CCHC-type
PROSITEPS501580.07084IPR001878Zinc finger, CCHC-type
PfamPF000980.0590000000000000048197IPR001878Zinc finger, CCHC-type
SMARTSM003436.400000387884858E-48197IPR001878Zinc finger, CCHC-type
PROSITEPS501580.08197IPR001878Zinc finger, CCHC-type
PfamPF000980.0620000000000000292108IPR001878Zinc finger, CCHC-type
SMARTSM003436.400000387884858E-492108IPR001878Zinc finger, CCHC-type
PROSITEPS501580.092108IPR001878Zinc finger, CCHC-type
PfamPF000984.7999999999999974E-4100115IPR001878Zinc finger, CCHC-type
SMARTSM003436.80000200614765E-5100116IPR001878Zinc finger, CCHC-type
PROSITEPS501580.0100114IPR001878Zinc finger, CCHC-type
PfamPF000980.07099999999999998122138IPR001878Zinc finger, CCHC-type
SMARTSM003436.400000387884858E-4122138IPR001878Zinc finger, CCHC-type
PROSITEPS501580.0122138IPR001878Zinc finger, CCHC-type