You are querying gene by "AT2G34900".

Locus: AT2G34900 Alias: GTE01

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Encodes a protein of 386 amino acid wwith one 89-amino-acid bromodomain and an N-terminal, 64-amino-acid NET domain, a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors 12969431

Basic gene information ( show / hide contents )

Locus AT2G34900 | Chromosome: 2 | Strand: -
Description Encodes a protein of 386 amino acid wwith one 89-amino-acid bromodomain and an N-terminal, 64-amino-acid NET domain, a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors
Alias
GTE01( alias )
GTE1( alias )
IMB1( alias )
Gene model
AT2G34900.2 | From: 14730221 | To: 14732708
AT2G34900.1 | From: 14730092 | To: 14732729
Sequence
AT2G34900.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G34900.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
cellular_component
nucleus PMID: 12969431
biological_process
positive regulation of seed germination PMID: 12969431
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
imb1 12969431 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G34900.1 
length: 1569 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.067872 
 
position  1284 
target 5' A              U     G 
           GAAG GAACAAGAG UUGGU  
           CUUU CUUGUUCUU GACUA  
miRNA  3' A    G         U       
 
 
target: AT2G34900.1 
length: 1569 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -28.3 kcal/mol 
p-value: 0.000213 
 
position  689 
target 5' C    G               U 
           UGGA AAAUUUGAGGAGAAA  
           ACCU UUUAAACUCCUUUUU  
miRNA  3' A    A                 
 
 
target: AT2G34900.2 
length: 1380 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.060180 
 
position  1224 
target 5' A              U     G 
           GAAG GAACAAGAG UUGGU  
           CUUU CUUGUUCUU GACUA  
miRNA  3' A    G         U       
 
 
target: AT2G34900.2 
length: 1380 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -28.3 kcal/mol 
p-value: 0.000171 
 
position  629 
target 5' C    G               U 
           UGGA AAAUUUGAGGAGAAA  
           ACCU UUUAAACUCCUUUUU  
miRNA  3' A    A                 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G34900AT1G04240nondirectionprotein interactionN/Amutance12969431
AT2G34900AT1G04550nondirectionprotein interactionN/Amutance12969431
AT2G34900AT1G09570PositiveotherN/Amolecular12969431
AT2G34900AT1G15580nondirectionprotein interactionN/Amutance12969431
AT2G34900AT2G32410nondirectionprotein interactionN/Amutance12969431
AT2G34900AT2G38120nondirectionprotein interactionN/Amutance12969431
AT2G34900AT3G15540nondirectionprotein interactionN/Amutance12969431
AT2G34900AT4G14550nondirectionprotein interactionN/Amutance12969431
AT2G34900AT4G14560nondirectionprotein interactionN/Amutance12969431
AT2G34900AT5G25890nondirectionprotein interactionN/Amutance12969431
AT2G34900AT5G43700nondirectionprotein interactionN/Amutance12969431
AT2G34900AUX3nondirectionprotein interactionN/Amutance12969431

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15114
AccessionTaxon
NP_973602Arabidopsis thaliana
188250Chlamydomonas reinhardtii
NP_181036 ( AT2G34900 )Arabidopsis thaliana
NP_001056736Oryza sativa Japonica Group
e_gw1.3.202.1Physcomitrella patens subsp. patens
e_gw1.353.19.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_120131Physcomitrella patens subsp. patens
27837.m000164Ricinus communis
29740.m000495Ricinus communis
NP_190796Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM002971.999996360345208E-371103IPR001487Bromodomain
SuperFamilySSF473701.3E-331114IPR001487Bromodomain
PIRPIRSF0381540.01386IPR017413Transcription factor GTE6
PfamPF004391.2000000000000005E-22688IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.1000015067164284E-337132IPR001487Bromodomain
PROSITEPS500140.01284IPR001487Bromodomain
PRINTSPR005032.1999990098070814E-221528IPR001487Bromodomain
PROSITEPS006330.01776IPR018359Bromodomain, conserved site
PRINTSPR005032.1999990098070814E-223147IPR001487Bromodomain
PRINTSPR005032.1999990098070814E-224765IPR001487Bromodomain
PRINTSPR005032.1999990098070814E-226584IPR001487Bromodomain
SuperFamilySSF473701.8E-3683224IPR001487Bromodomain
SMARTSM002976.999976598506609E-42103213IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.600041308841925E-34110242IPR001487Bromodomain
PfamPF004392.200000000000004E-22116198IPR001487Bromodomain
PROSITEPS500140.0122194IPR001487Bromodomain
PRINTSPR005036.699996876259988E-22125138IPR001487Bromodomain
PROSITEPS006330.0127186IPR018359Bromodomain, conserved site
PRINTSPR005036.699996876259988E-22141157IPR001487Bromodomain
PRINTSPR005036.699996876259988E-22157175IPR001487Bromodomain
PRINTSPR005036.699996876259988E-22175194IPR001487Bromodomain