You are querying gene by "AT2G33310".

Locus: AT2G33310 Alias: IAA13

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 12036262

Basic gene information ( show / hide contents )

Locus AT2G33310 | Chromosome: 2 | Strand: -
Description response to auxin stimulus
Alias
IAA13( alias )
Gene model
AT2G33310.1 | From: 14121358 | To: 14123164
AT2G33310.2 | From: 14121358 | To: 14123046
Sequence
AT2G33310.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G33310.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
response to auxin stimulus PMID: 12036262
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G33310.1 
length: 1359 
miRNA : ath-miR778
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.011983 
 
position  725 
target 5' A    A        G     G 
           GGUG ACAUGGAU GAGUU  
           CCAC UGUAUUUG UUCGG  
miRNA  3' G    A        G     U 
 
 
target: AT2G33310.2 
length: 1244 
miRNA : ath-miR778
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.010743 
 
position  610 
target 5' A    A        G     G 
           GGUG ACAUGGAU GAGUU  
           CCAC UGUAUUUG UUCGG  
miRNA  3' G    A        G     U 
 
 
target: AT2G33310.3 
length: 1820 
miRNA : ath-miR778
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.016960 
 
position  662 
target 5' A    A        G     G 
           GGUG ACAUGGAU GAGUU  
           CCAC UGUAUUUG UUCGG  
miRNA  3' G    A        G     U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45122
AccessionTaxon
NP_001118434 ( AT2G33310 )Arabidopsis thaliana
NP_171949Arabidopsis thaliana
NP_180889Arabidopsis thaliana
NP_850205Arabidopsis thaliana
30008.m000799Ricinus communis
NP_849589Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023094.6e-5257234IPR003311AUX/IAA protein
PfamPF023091.0999999999999873E-4858233IPR003311AUX/IAA protein
PROSITEPS509620.0129225IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS5096235.523130226IPR011525Aux/IAA-ARF-dimerisation