You are querying gene by "AT2G29980".

Locus: AT2G29980 Alias: FAD3

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 12239389 8102138

Basic gene information ( show / hide contents )

Locus AT2G29980 | Chromosome: 2 | Strand: -
Description Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.
FAD3( alias )
Gene model
AT2G29980.1 | From: 12788668 | To: 12792130
AT2G29980.2 | From: 12788668 | To: 12792114
AT2G29980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G29980.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
omega-3 fatty acid desaturase activity PMID: 8029334
endoplasmic reticulum PMID: 8102138
unsaturated fatty acid biosynthetic process PMID: 8102138
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Other lipid metabolism
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fad3-2 8102138 9276960 mutant
fad3-2 fad7-2 fad8 12239389 mutant

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT2G29980.1 
length: 1464 
miRNA : ath-miR863-3p
length: 21 
mfe: -24.1 kcal/mol 
p-value: 0.006258 
position  1319 
target 5' U    U               G 
miRNA  3' U    C                 
target: AT2G29980.2 
length: 1526 
miRNA : ath-miR863-3p
length: 21 
mfe: -24.1 kcal/mol 
p-value: 0.006573 
position  1381 
target 5' U    U               G 
miRNA  3' U    C                 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12320
NP_001078140Arabidopsis thaliana
NP_187819Arabidopsis thaliana
135825Chlamydomonas reinhardtii
NP_001047927Oryza sativa Japonica Group
NP_001059466Oryza sativa Japonica Group
estExt_genewise1.C_Chr_17.00010051Ostreococcus tauri
fgenesh1_pm.C_Chr_02.0001000095Ostreococcus tauri
estExt_gwp_gw1.C_210129Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_300081Physcomitrella patens subsp. patens
28035.m000362Ricinus communis
29613.m000358Ricinus communis
NP_180559 ( AT2G29980 )Arabidopsis thaliana
NP_001059467Oryza sativa Japonica Group
e_gw1.8129.1.1Physcomitrella patens subsp. patens
29681.m001360Ricinus communis
NP_001065926Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF119605.20000000000001E-241870IPR021863Protein of unknown function DUF3474
PfamPF119601.1e-261870IPR021863Protein of unknown function DUF3474
PfamPF004873.300000000000004E-2178270IPR005804Fatty acid desaturase, type 1
PfamPF004871.6e-3378333IPR005804Fatty acid desaturase, type 1