You are querying gene by "AT2G29980".

Locus: AT2G29980 Alias: FAD3

Hormone Evidence Function category Gene Description PMID
jasmonic acidMutant Hormone biosynthesis Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 12239389 8102138

Basic gene information ( show / hide contents )

Locus AT2G29980 | Chromosome: 2 | Strand: -
Description Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.
Alias
FAD3( alias )
Gene model
AT2G29980.1 | From: 12788668 | To: 12792130
AT2G29980.2 | From: 12788668 | To: 12792114
Sequence
AT2G29980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G29980.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
omega-3 fatty acid desaturase activity PMID: 8029334
cellular_component
endoplasmic reticulum PMID: 8102138
biological_process
unsaturated fatty acid biosynthetic process PMID: 8102138
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Other lipid metabolism
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
fad3-2 8102138 9276960 mutant
fad3-2 fad7-2 fad8 12239389 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G29980.1 
length: 1464 
miRNA : ath-miR863-3p
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.006258 
 
position  1319 
target 5' U    U               G 
           UUAU UCUUGUUGUUUUUAA  
           AAUA AGAACAACGAGAGUU  
miRNA  3' U    C                 
 
 
target: AT2G29980.2 
length: 1526 
miRNA : ath-miR863-3p
length: 21 
 
mfe: -24.1 kcal/mol 
p-value: 0.006573 
 
position  1381 
target 5' U    U               G 
           UUAU UCUUGUUGUUUUUAA  
           AAUA AGAACAACGAGAGUU  
miRNA  3' U    C                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12320
AccessionTaxon
NP_001078140Arabidopsis thaliana
NP_187819Arabidopsis thaliana
135825Chlamydomonas reinhardtii
NP_001047927Oryza sativa Japonica Group
NP_001059466Oryza sativa Japonica Group
estExt_genewise1.C_Chr_17.00010051Ostreococcus tauri
fgenesh1_pm.C_Chr_02.0001000095Ostreococcus tauri
estExt_gwp_gw1.C_210129Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_300081Physcomitrella patens subsp. patens
28035.m000362Ricinus communis
29613.m000358Ricinus communis
NP_180559 ( AT2G29980 )Arabidopsis thaliana
NP_001059467Oryza sativa Japonica Group
e_gw1.8129.1.1Physcomitrella patens subsp. patens
29681.m001360Ricinus communis
NP_001065926Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF119605.20000000000001E-241870IPR021863Protein of unknown function DUF3474
PfamPF119601.1e-261870IPR021863Protein of unknown function DUF3474
PfamPF004873.300000000000004E-2178270IPR005804Fatty acid desaturase, type 1
PfamPF004871.6e-3378333IPR005804Fatty acid desaturase, type 1