You are querying gene by "AT2G28350".

Locus: AT2G28350 Alias: ARF10

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - abscisic acid mediated signaling 17672844
auxinMutant Hormone signal transduction transcription factor 16006581
GeneOntology - auxin mediated signaling pathway 17672844

Basic gene information ( show / hide contents )

Locus AT2G28350 | Chromosome: 2 | Strand: +
Description transcription factor
Alias
ARF10( alias )
Gene model
AT2G28350.1 | From: 12121408 | To: 12123925
Sequence
AT2G28350.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
miRNA binding PMID: 15829600
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
fruit development PMID: 17672844
abscisic acid mediated signaling PMID: 17672844
regulation of transcription, DNA-dependent PMID:
auxin mediated signaling pathway PMID: 17672844
pattern specification process PMID: 16006581
cell division PMID: 16006581
response to carbohydrate stimulus PMID: 17672844
root cap development PMID: 16006581
developmental growth PMID: 17672844
regulation of anthocyanin biosynthetic process PMID: 17672844
leaf development PMID: 17672844
petal development PMID: 17672844
sepal development PMID: 17672844
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
arf10-2 16006581 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G28350.1 
length: 2265 
miRNA : ath-miR160a
length: 21 
 
mfe: -44.5 kcal/mol 
p-value: 0.000057 
 
position  1329 
target 5' A  A                 A 
           GG AUACAGGGAGCCAGGCA  
           CC UAUGUCCCUCGGUCCGU  
miRNA  3' A  G                   
 
 
target: AT2G28350.1 
length: 2265 
miRNA : ath-miR160b
length: 21 
 
mfe: -44.5 kcal/mol 
p-value: 0.000073 
 
position  1329 
target 5' A  A                 A 
           GG AUACAGGGAGCCAGGCA  
           CC UAUGUCCCUCGGUCCGU  
miRNA  3' A  G                   
 
 
target: AT2G28350.1 
length: 2265 
miRNA : ath-miR160c
length: 21 
 
mfe: -44.5 kcal/mol 
p-value: 0.000188 
 
position  1329 
target 5' A  A                 A 
           GG AUACAGGGAGCCAGGCA  
           CC UAUGUCCCUCGGUCCGU  
miRNA  3' A  G                   
 
 
target: AT2G28350.1 
length: 2265 
miRNA : ath-miR1886.3
length: 21 
 
mfe: -18.1 kcal/mol 
p-value: 0.215831 
 
position  1553 
target 5' A  A     A       G      C 
           GG UAAGA GAAGUCU UUGGUU  
           UC AUUCU CUUUAGA AAUUAA  
miRNA  3'          A                
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G28350AT1G08780PositivetransciptN/Amolecular17672844
AT2G28350AT1G74740PositivetransciptN/Amolecular18599455
AT2G28350AT2G14610negativetransciptN/Abiochem17276977
AT2G28350AT2G40220PositivetransciptN/Amolecular17672844
AT2G28350AT4G30610PositivetransciptN/AGO/othersN/A
AT2G28350AT5G18560PositivetransciptN/Amutance17630277
AT2G28350AT5G57050PositivetransciptN/Amolecular17672844
AT2G28350CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30395
AccessionTaxon
NP_180402 ( AT2G28350 )Arabidopsis thaliana
NP_567841Arabidopsis thaliana
NP_001047488Oryza sativa Japonica Group
NP_001058399Oryza sativa Japonica Group
NP_001064872Oryza sativa Japonica Group
e_gw1.279.55.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3390006Physcomitrella patens subsp. patens
27494.m000045Ricinus communis
27538.m000327Ricinus communis
30078.m002329Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023621.7e-22115216IPR003340Transcriptional factor B3
PROSITEPS5086313.183115217IPR003340Transcriptional factor B3
PfamPF065073.4e-33277360IPR010525Auxin response factor
PfamPF023091.3e-09577656IPR003311AUX/IAA protein
PROSITEPS5096221.195581660IPR011525Aux/IAA-ARF-dimerisation