You are querying gene by "AT2G25170".

Locus: AT2G25170 Alias: CHD3

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - negative regulation of abscisic acid mediated signaling 17892443
auxinGeneOntology - response to auxin stimulus 17010112
gibberellinGeneOntology - response to gibberellin stimulus 9204906

Basic gene information ( show / hide contents )

Locus AT2G25170 | Chromosome: 2 | Strand: +
Description response to auxin stimulus
CHD3( alias )
CHR6( alias )
GYM( alias )
PKL( alias )
SSL2( alias )
Gene model
AT2G25170.1 | From: 10721485 | To: 10731065
AT2G25170.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
DNA binding PMID: 10570159
DNA helicase activity PMID: 10570159
ATPase activity PMID: 10570159
nucleus PMID: 16359393
response to auxin stimulus PMID: 17010112
response to gibberellin stimulus PMID: 9204906
lateral root development PMID: 17010112
root development PMID: 9204906
negative regulation of transcription PMID: 10570159
cell proliferation PMID: 9204906
negative regulation of abscisic acid mediated signaling PMID: 17892443
chromatin modification PMID: 10570159
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT2G25170.1 
length: 4402 
miRNA : ath-miR779.1
length: 21 
mfe: -26.1 kcal/mol 
p-value: 0.052907 
position  2506 
target 5' A    G          U      C 
miRNA  3'                    G   U 
target: AT2G25170.1 
length: 4402 
miRNA : ath-miR867
length: 21 
mfe: -22.5 kcal/mol 
p-value: 0.041955 
position  581 
target 5' G      G       C    G U 
miRNA  3' A                   G U 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12160
NP_194918Arabidopsis thaliana
NP_565587 ( AT2G25170 )Arabidopsis thaliana
NP_001056988Oryza sativa Japonica Group
e_gw1.235.1.1Physcomitrella patens subsp. patens
e_gw1.33.19.1Physcomitrella patens subsp. patens
29848.m004557Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF579032.5E-1141101IPR011011Zinc finger, FYVE/PHD-type
PROSITEPS500160.04996IPR019787Zinc finger, PHD-finger
SMARTSM002494.000003008698826E-115194IPR001965Zinc finger, PHD-type
PfamPF006288.099999999999995E-65294IPR019787Zinc finger, PHD-finger
SMARTSM001840.109999999702295655293IPR001841Zinc finger, RING-type
PROSITEPS013590.05293IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF541604.6E-1185174IPR016197Chromo domain-like
SMARTSM002983.000000679928713E-897166IPR000953Chromo domain
PROSITEPS500130.098180IPR000953Chromo domain
PfamPF003852.2000000000000038E-1099156IPR000953Chromo domain
SMARTSM002989.399989427038313E-17188242IPR000953Chromo domain
PROSITEPS500130.0190249IPR000953Chromo domain
PfamPF003855.90000000000001E-11191239IPR000953Chromo domain
SMARTSM004872.9999875044570637E-33269482IPR014001DEAD-like helicase, N-terminal
PROSITEPS511920.0285471IPR014021Helicase, superfamily 1/2, ATP-binding domain
PROSITEPS511940.0599760IPR001650DNA/RNA helicase, C-terminal
SMARTSM004903.300005268071863E-23625709IPR001650DNA/RNA helicase, C-terminal
PfamPF002711.3000000000000007E-10631709IPR001650DNA/RNA helicase, C-terminal
PfamPF064651.1E-20830893IPR009463Protein of unknown function DUF1087
PfamPF064612.5000000000000137E-619101056IPR009462Protein of unknown function DUF1086