You are querying gene by "AT2G25170".

Locus: AT2G25170 Alias: CHD3

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - negative regulation of abscisic acid mediated signaling 17892443
auxinGeneOntology - response to auxin stimulus 17010112
gibberellinGeneOntology - response to gibberellin stimulus 9204906

Basic gene information ( show / hide contents )

Locus AT2G25170 | Chromosome: 2 | Strand: +
Description response to auxin stimulus
Alias
CHD3( alias )
CHR6( alias )
GYM( alias )
PKL( alias )
SSL2( alias )
Gene model
AT2G25170.1 | From: 10721485 | To: 10731065
Sequence
AT2G25170.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 10570159
DNA helicase activity PMID: 10570159
ATPase activity PMID: 10570159
cellular_component
nucleus PMID: 16359393
biological_process
response to auxin stimulus PMID: 17010112
response to gibberellin stimulus PMID: 9204906
lateral root development PMID: 17010112
root development PMID: 9204906
negative regulation of transcription PMID: 10570159
cell proliferation PMID: 9204906
negative regulation of abscisic acid mediated signaling PMID: 17892443
chromatin modification PMID: 10570159
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G25170.1 
length: 4402 
miRNA : ath-miR779.1
length: 21 
 
mfe: -26.1 kcal/mol 
p-value: 0.052907 
 
position  2506 
target 5' A    G          U      C 
           AUGA GCAGCAGCAU AG AGG  
           UACU CGUCGUUGUA UC UCU  
miRNA  3'                    G   U 
 
 
target: AT2G25170.1 
length: 4402 
miRNA : ath-miR867
length: 21 
 
mfe: -22.5 kcal/mol 
p-value: 0.041955 
 
position  581 
target 5' G      G       C    G U 
           UCCUGA UGGACCA UGUU A  
           AGGAUU AUUUGGU ACAA U  
miRNA  3' A                   G U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12160
AccessionTaxon
NP_194918Arabidopsis thaliana
NP_565587 ( AT2G25170 )Arabidopsis thaliana
NP_001056988Oryza sativa Japonica Group
e_gw1.235.1.1Physcomitrella patens subsp. patens
e_gw1.33.19.1Physcomitrella patens subsp. patens
29848.m004557Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF579032.5E-1141101IPR011011Zinc finger, FYVE/PHD-type
PROSITEPS500160.04996IPR019787Zinc finger, PHD-finger
SMARTSM002494.000003008698826E-115194IPR001965Zinc finger, PHD-type
PfamPF006288.099999999999995E-65294IPR019787Zinc finger, PHD-finger
SMARTSM001840.109999999702295655293IPR001841Zinc finger, RING-type
PROSITEPS013590.05293IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF541604.6E-1185174IPR016197Chromo domain-like
SMARTSM002983.000000679928713E-897166IPR000953Chromo domain
PROSITEPS500130.098180IPR000953Chromo domain
PfamPF003852.2000000000000038E-1099156IPR000953Chromo domain
SMARTSM002989.399989427038313E-17188242IPR000953Chromo domain
PROSITEPS500130.0190249IPR000953Chromo domain
PfamPF003855.90000000000001E-11191239IPR000953Chromo domain
SMARTSM004872.9999875044570637E-33269482IPR014001DEAD-like helicase, N-terminal
PfamPF001762.7999999999999406E-82276571IPR000330SNF2-related
PROSITEPS511920.0285471IPR014021Helicase, superfamily 1/2, ATP-binding domain
PROSITEPS511940.0599760IPR001650DNA/RNA helicase, C-terminal
SMARTSM004903.300005268071863E-23625709IPR001650DNA/RNA helicase, C-terminal
PfamPF002711.3000000000000007E-10631709IPR001650DNA/RNA helicase, C-terminal
PfamPF064651.1E-20830893IPR009463Protein of unknown function DUF1087
PfamPF064612.5000000000000137E-619101056IPR009462Protein of unknown function DUF1086