You are querying gene by "AT2G22670".

Locus: AT2G22670 Alias: IAA8

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 12036262

Basic gene information ( show / hide contents )

Locus AT2G22670 | Chromosome: 2 | Strand: +
Description response to auxin stimulus
Alias
IAA8( alias )
Gene model
AT2G22670.1 | From: 9643520 | To: 9645763
AT2G22670.2 | From: 9643520 | To: 9645747
AT2G22670.3 | From: 9643572 | To: 9645763
Sequence
AT2G22670.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G22670.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G22670.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 15610358
cytoplasm PMID: 15610358
biological_process
response to auxin stimulus PMID: 12036262
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G22670.1 
length: 1418 
miRNA : ath-miR1888
length: 21 
 
mfe: -21.6 kcal/mol 
p-value: 0.020097 
 
position  1395 
target 5' C   A   A             U 
           UCU CGC AAAUCUUGAUUUG  
           AGA GUG UUUAGAAUUGAAU  
miRNA  3' A   A                   
 
 
target: AT2G22670.1 
length: 1418 
miRNA : ath-miR844
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.008668 
 
position  1064 
target 5' U      U      G      U 
           GCUUGU GGCGAU UU CCA  
           CGAAUA UCGUUA AA GGU  
miRNA  3' U      U      G  U     
 
 
target: AT2G22670.2 
length: 1396 
miRNA : ath-miR844
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.008536 
 
position  1064 
target 5' U      U      G      U 
           GCUUGU GGCGAU UU CCA  
           CGAAUA UCGUUA AA GGU  
miRNA  3' U      U      G  U     
 
 
target: AT2G22670.3 
length: 1369 
miRNA : ath-miR1888
length: 21 
 
mfe: -21.6 kcal/mol 
p-value: 0.019216 
 
position  1346 
target 5' C   A   A             U 
           UCU CGC AAAUCUUGAUUUG  
           AGA GUG UUUAGAAUUGAAU  
miRNA  3' A   A                   
 
 
target: AT2G22670.3 
length: 1369 
miRNA : ath-miR844
length: 21 
 
mfe: -23.5 kcal/mol 
p-value: 0.008373 
 
position  1015 
target 5' U      U      G      U 
           GCUUGU GGCGAU UU CCA  
           CGAAUA UCGUUA AA GGU  
miRNA  3' U      U      G  U     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_69466
AccessionTaxon
NP_001077943 ( AT2G22670 )Arabidopsis thaliana
NP_179852Arabidopsis thaliana
NP_850028Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023091.7e-8347309IPR003311AUX/IAA protein
PfamPF023095.900000000000079E-8047309IPR003311AUX/IAA protein
PROSITEPS5096230.070200302IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS509620.0200302IPR011525Aux/IAA-ARF-dimerisation