You are querying gene by "AT2G20610".

Locus: AT2G20610 Alias: ALF1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone biosynthesis C-S lyase of Glucosinolate biosynthesis 8589625

Basic gene information ( show / hide contents )

Locus AT2G20610 | Chromosome: 2 | Strand: -
Description C-S lyase of Glucosinolate biosynthesis
Alias
ALF1( alias )
HLS3( alias )
RTY( alias )
RTY1( alias )
SUR1( alias )
Gene model
AT2G20610.1 | From: 8885041 | To: 8887466
AT2G20610.2 | From: 8885042 | To: 8887466
Sequence
AT2G20610.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G20610.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transaminase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
regulation of cell growth by extracellular stimulus PMID: 15851402
adventitious root development PMID: 16377752
indoleacetic acid biosynthetic process PMID: 8589625
KEGG pathway This gene participates in 5 pathways:
Pathway Enzyme
Tyrosine metabolism tyrosine aminotransferase
Phenylalanine metabolism tyrosine aminotransferase
Phenylalanine, tyrosine and tryptophan biosynthesis tyrosine aminotransferase
Alkaloid biosynthesis I tyrosine aminotransferase
Novobiocin biosynthesis tyrosine aminotransferase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
sur1 8589625 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR168a
length: 21 
 
mfe: -30.6 kcal/mol 
p-value: 0.014042 
 
position  333 
target 5' C     U         G    U  A 
           UUCCG ACCUGUAUC AAGC GA  
           AGGGC UGGACGUGG UUCG CU  
miRNA  3' A                         
 
 
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR168b
length: 21 
 
mfe: -30.6 kcal/mol 
p-value: 0.013263 
 
position  333 
target 5' C     U         G    U  A 
           UUCCG ACCUGUAUC AAGC GA  
           AGGGC UGGACGUGG UUCG CU  
miRNA  3' A                         
 
 
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR447a
length: 22 
 
mfe: -27.2 kcal/mol 
p-value: 0.015983 
 
position  552 
target 5' A    C          C     C 
           AACG AAACAUCUUG UCCCA  
           UUGU UUUGUAGAGC GGGGU  
miRNA  3' G               A     U 
 
 
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR447b
length: 22 
 
mfe: -27.2 kcal/mol 
p-value: 0.011854 
 
position  552 
target 5' A    C          C     C 
           AACG AAACAUCUUG UCCCA  
           UUGU UUUGUAGAGC GGGGU  
miRNA  3' G               A     U 
 
 
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.044723 
 
position  650 
target 5' A                    C 
           GAAA GAAUGGGAGAUUGAU  
           CUUU CUUGUUCUUUGACUA  
miRNA  3' A    G                 
 
 
target: AT2G20610.1 
length: 1669 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.039260 
 
position  780 
target 5' A       C         C  G 
           GAGACGG UAGGAAGCU GG  
           CUUUGCU GUUCUUUGA CU  
miRNA  3' A       U            A 
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR168a
length: 21 
 
mfe: -30.6 kcal/mol 
p-value: 0.014793 
 
position  333 
target 5' C     U         G    U  A 
           UUCCG ACCUGUAUC AAGC GA  
           AGGGC UGGACGUGG UUCG CU  
miRNA  3' A                         
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR168b
length: 21 
 
mfe: -30.6 kcal/mol 
p-value: 0.013929 
 
position  333 
target 5' C     U         G    U  A 
           UUCCG ACCUGUAUC AAGC GA  
           AGGGC UGGACGUGG UUCG CU  
miRNA  3' A                         
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR447a
length: 22 
 
mfe: -27.2 kcal/mol 
p-value: 0.016669 
 
position  552 
target 5' A    C          C     C 
           AACG AAACAUCUUG UCCCA  
           UUGU UUUGUAGAGC GGGGU  
miRNA  3' G               A     U 
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR447b
length: 22 
 
mfe: -27.2 kcal/mol 
p-value: 0.012583 
 
position  552 
target 5' A    C          C     C 
           AACG AAACAUCUUG UCCCA  
           UUGU UUUGUAGAGC GGGGU  
miRNA  3' G               A     U 
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.4 kcal/mol 
p-value: 0.046764 
 
position  650 
target 5' A                    C 
           GAAA GAAUGGGAGAUUGAU  
           CUUU CUUGUUCUUUGACUA  
miRNA  3' A    G                 
 
 
target: AT2G20610.2 
length: 1748 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -23.7 kcal/mol 
p-value: 0.041081 
 
position  780 
target 5' A       C         C  G 
           GAGACGG UAGGAAGCU GG  
           CUUUGCU GUUCUUUGA CU  
miRNA  3' A       U            A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12361
AccessionTaxon
NP_198465Arabidopsis thaliana
NP_001046626Oryza sativa Japonica Group
NP_001046628Oryza sativa Japonica Group
NP_001057579Oryza sativa Japonica Group
NP_001068082Oryza sativa Japonica Group
e_gw1.01.00.247.1Ostreococcus tauri
estExt_Genewise1.C_1210090Physcomitrella patens subsp. patens
29705.m000603Ricinus communis
NP_200208Arabidopsis thaliana
NP_001031739Arabidopsis thaliana
NP_179650 ( AT2G20610 )Arabidopsis thaliana
NP_180058Arabidopsis thaliana
NP_194570Arabidopsis thaliana
NP_194571Arabidopsis thaliana
NP_973489Arabidopsis thaliana
29983.m003144Ricinus communis
29983.m003145Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0005170.01455IPR021178Tyrosine transaminase
PIRPIRSF0005170.01417IPR021178Tyrosine transaminase
TIGRFAMTIGR012650.033440IPR005958Tyrosine/nicotianamine aminotransferase
TIGRFAMTIGR012650.033419IPR005958Tyrosine/nicotianamine aminotransferase
SuperFamilySSF533832.1E-8038433IPR015424Pyridoxal phosphate-dependent transferase, major domain
SuperFamilySSF533835.6E-7239411IPR015424Pyridoxal phosphate-dependent transferase, major domain
PfamPF001556.800000000000057E-5069432IPR004839Aminotransferase, class I/classII
PfamPF001551.4999999999999956E-4469410IPR004839Aminotransferase, class I/classII
Gene3DG3DSA:3.40.640.104.699982625131889E-5386331IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Gene3DG3DSA:3.40.640.104.699982625131889E-5386331IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PRINTSPR007537.000007341299033E-10133153IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007535.799996538547805E-10133153IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007537.000007341299033E-10155176IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007535.799996538547805E-10155176IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007537.000007341299033E-10202226IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007535.799996538547805E-10202226IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007537.000007341299033E-10238261IPR0011761-aminocyclopropane-1-carboxylate synthase
PRINTSPR007535.799996538547805E-10238261IPR0011761-aminocyclopropane-1-carboxylate synthase