You are querying gene by "AT2G18790".

Locus: AT2G18790 Alias: HY3

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - abscisic acid metabolic process 17010113

Basic gene information ( show / hide contents )

Locus AT2G18790 | Chromosome: 2 | Strand: +
Description abscisic acid metabolic process
Alias
HY3( alias )
OOP1( alias )
PHYB( alias )
Gene model
AT2G18790.1 | From: 8146963 | To: 8151512
Sequence
AT2G18790.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
G-protein coupled photoreceptor activity PMID:
red or far-red light photoreceptor activity PMID: 0012177480
signal transducer activity PMID:
protein histidine kinase activity PMID:
cellular_component
nucleus PMID: 10225946
biological_process
red light signaling pathway PMID: 17076805
response to low fluence red light PMID: 9351250
regulation of transcription, DNA-dependent PMID:
response to cold PMID: 12148528
entrainment of circadian clock PMID: 0012177480
abscisic acid metabolic process PMID: 17010113
regulation of seed germination PMID: 17010113
gravitropism PMID: 15695459
phototropism PMID: 14686433
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Two-component system two-component system, unclassified family, sensor kinase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G18790.1 
length: 3996 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -24.7 kcal/mol 
p-value: 0.058013 
 
position  2120 
target 5' C                    G 
           GGGG GAACAGGGGAUUGAU  
           CUUU CUUGUUCUUUGACUA  
miRNA  3' A    G                 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G18790AT1G14920negativeprotein degradationN/Amutance12271067
AT2G18790AT1G17060PositiveotherN/Amutance15689343
AT2G18790AT1G66350negativeprotein degradationN/Amutance12183174
AT2G18790AT2G01570negativeprotein degradationN/Amutance9215910
AT2G18790AT2G20180negativeotherN/Amutance17449805
AT2G18790AT2G26710PositiveotherN/Amutance10611382
AT2G18790AT3G03450negativeprotein degradationN/Amutance11118137
AT2G18790AT5G17490negativeprotein degradationN/Amutance11118137

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19079
AccessionTaxon
29693.m002076Ricinus communis
NP_001117256Arabidopsis thaliana
NP_172428Arabidopsis thaliana
NP_179469 ( AT2G18790 )Arabidopsis thaliana
NP_193360Arabidopsis thaliana
NP_193547Arabidopsis thaliana
NP_198433Arabidopsis thaliana
NP_001049910Oryza sativa Japonica Group
NP_001051096Oryza sativa Japonica Group
NP_001051296Oryza sativa Japonica Group
e_gw1.13.2.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_1640046Physcomitrella patens subsp. patens
estExt_Genewise1.C_2330008Physcomitrella patens subsp. patens
estExt_Genewise1.C_3270009Physcomitrella patens subsp. patens
estExt_Genewise1.C_470039Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_910062Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_810097Physcomitrella patens subsp. patens
29889.m003301Ricinus communis
30128.m008997Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0000840.0321162IPR012129Phytochrome A/B/C/D/E
PfamPF084461.2999999999999797E-40103219IPR013654PAS fold-2
PRINTSPR010331.6999880237095305E-107167189IPR001294Phytochrome
SMARTSM000652.3000044072653394E-21252443IPR003018GAF
PROSITEPS500460.0252423IPR016132Phytochrome chromophore attachment domain
PfamPF015905.1000000000000425E-36253433IPR003018GAF
PRINTSPR010331.6999880237095305E-107267286IPR001294Phytochrome
PRINTSPR010331.6999880237095305E-107352373IPR001294Phytochrome
PROSITEPS002450.0352361IPR013516Phytochrome chromophore binding site
PfamPF003602.7999999999999405E-67445622IPR013515Phytochrome, central region
PRINTSPR010331.6999880237095305E-107463483IPR001294Phytochrome
PRINTSPR010331.6999880237095305E-107548567IPR001294Phytochrome
PRINTSPR010331.6999880237095305E-107581599IPR001294Phytochrome
TIGRFAMTIGR002293.899998617952183E-5650780IPR000014PAS
PROSITEPS501120.0652723IPR000014PAS
SMARTSM000913.000000679928713E-8654721IPR000014PAS
PRINTSPR010331.6999880237095305E-107655671IPR001294Phytochrome
PfamPF009894.599999999999999E-20655770IPR013767PAS fold
PRINTSPR010331.6999880237095305E-107674689IPR001294Phytochrome
PRINTSPR010331.6999880237095305E-107748765IPR001294Phytochrome
PRINTSPR010331.6999880237095305E-107768788IPR001294Phytochrome
SMARTSM000910.37999999302729404785855IPR000014PAS
PfamPF009891.9999999999999945E-20786905IPR013767PAS fold
PROSITEPS501120.0786838IPR000014PAS
SMARTSM003881.3999989204987803E-10927991IPR003661Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
PfamPF005124.699999999999995E-6930991IPR003661Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
PROSITEPS501090.09341153IPR005467Signal transduction histidine kinase, core
SuperFamilySSF558741.7E-179911151IPR003594ATPase-like, ATP-binding domain
PfamPF025181.6000000000000008E-810391144IPR003594ATPase-like, ATP-binding domain
SMARTSM003871.5999988934925166E-1510391153IPR003594ATPase-like, ATP-binding domain